YRC Public Data Repository - Protein Structure Prediction

Protein:	TSNAX_MOUSE
Organism:	Mus musculus
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TSNAX_MOUSE.

Description	E-value	Query Range	Subject Range
TSNAX - translin-associated factor X TSNAX_PONPY - Translin-associated protein X - Pongo pygmaeus (Orangutan) TSNAX_PONAB - Translin-associated protein X OS=Pongo abelii GN=TSNAX PE=2 SV=1	396.0	[0..1]	[290..1]
gi\|109019979 - gi\|109019979\|ref\|XP_001104647.1\| PREDICTED: similar to translin-associated factor X isoform 2 [Macac...	395.0	[0..1]	[290..1]
TSNAX_RAT - Translin-associated protein X OS=Rattus norvegicus GN=Tsnax PE=1 SV=1	394.0	[0..1]	[290..1]
gi\|73952516 - gi\|73952516\|ref\|XP_536345.2\| PREDICTED: similar to translin-associated factor X isoform 1 [Canis fam...	393.0	[0..1]	[290..1]
gi\|74192795 - gi\|74192795\|dbj\|BAE34910.1\| unnamed protein product [Mus musculus]	392.0	[0..1]	[290..1]
TSNAX_MACFA - Translin-associated protein X OS=Macaca fascicularis GN=TSNAX PE=2 SV=1	391.0	[0..1]	[290..1]
gi\|114573227 - gi\|114573227\|ref\|XP_514271.2\| PREDICTED: translin-associated factor X [Pan troglodytes]	390.0	[0..1]	[290..1]
gi\|148234072, gi... - gi\|32450090\|gb\|AAH54180.1\| MGC64311 protein [Xenopus laevis], gi\|148234072\|ref\|NP_001079762.1\| hypot...	344.0	[0..5]	[289..4]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGKEGPGGF RKRKHDTFPH NQRREGKDAS LSSPVMLAFK SFQQELDARH DKYERLVKLS  60
   61 RDITVESKRT IFLLHRITSA PDMEEILTES ESKLDGVRQK ILQVAQELSG EDMHQFHRAV 120
  121 TTGLQEYVEA VSFQHFIKTR SLISMEEINK QLTFTAEDSG KESKTPPAEG QEKQLVTWRL 180
  181 KLTPVDYLLG VADLTGELMR MCINSVGNGD IDTPFEVSQF LRQVYDGFSF IGNTGPYEVS 240
  241 KKLYTLKQSL AKVENACYAL KVRGSEIPKH MLADVFSVKT DMIDQEESIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.0
Match:	1keyA
Description:	Testis/brain RNA-binding protein (TB-RBP)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	2.3188629697616	bayes_pls_golite062009
binding	1.94480454487356	bayes_pls_golite062009
DNA binding	1.58937601934226	bayes_pls_golite062009
structure-specific DNA binding	1.56664100418006	bayes_pls_golite062009
single-stranded DNA binding	1.3845125644471	bayes_pls_golite062009
RNA binding	0.41002712924518	bayes_pls_golite062009
protein binding	0.335015582245911	bayes_pls_golite062009
telomeric DNA binding	0.12832953268809	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: