YRC Public Data Repository - Protein Structure Prediction

Protein:	LAGE3_MOUSE
Organism:	Mus musculus
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LAGE3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|20071086 - gi\|20071086\|gb\|AAH27305.1\| Lage3 protein [Mus musculus]	227.0	[0..1]	[148..1]
gi\|157821989, gi... - gi\|34881763\|ref\|XP_215227.2\| PREDICTED: similar to Eso3 protein [Rattus norvegicus], gi\|157821989\|re...	224.0	[0..1]	[148..1]
gi\|49076972, gi\|... - gi\|71021407\|ref\|XP_760934.1\| hypothetical protein UM04787.1 [Ustilago maydis 521], ref\|XP_402402.1\| ...	155.0	[0..1]	[144..483]
gi\|118341658, gi... - gi\|56567192\|gb\|AAV98585.1\| LAGE-1a protein transcript variant 1 [Homo sapiens], gi\|3255959\|emb\|CAA11...	149.0	[0..27]	[144..54]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTAHTGLSH TADGADGQTS RCCPGNAGTK AVIPSGAHPV ARALEASRNS SKSMVPLTQR  60
   61 PGTRHHRFSL FVPFPTSLEA EIACGSLVPD VEPHRGLVGK ELKVSGCMLE VRWIAEDSRL 120
  121 LRLSIINFLD QLSLVVNTIQ LFGPPVSC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.236572
Match:	PF09341.1
Description:	No description for PF09341.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits