YRC Public Data Repository - Protein Structure Prediction

Protein:	RM35_MOUSE
Organism:	Mus musculus
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM35_MOUSE.

Description	E-value	Query Range	Subject Range
MRPL35 - mitochondrial ribosomal protein L35	317.0	[0..1]	[188..1]
gi\|55729602 - gi\|55729602\|emb\|CAH91530.1\| hypothetical protein [Pongo abelii] gi\|197100216 - gi\|197100216\|ref\|NP_001125898.1\| mitochondrial ribosomal protein L35 [Pongo abelii]	309.0	[0..1]	[188..1]
gi\|34855981, gi\|... - gi\|34855981\|ref\|XP_216169.2\| PREDICTED: similar to mitochondrial ribosomal protein L35 [Rattus norve...	303.0	[0..1]	[188..1]
RM35_BOVIN - 39S ribosomal protein L35, mitochondrial OS=Bos taurus GN=MRPL35 PE=2 SV=2	294.0	[0..1]	[188..1]
gi\|73980894 - gi\|73980894\|ref\|XP_854825.1\| PREDICTED: similar to mitochondrial ribosomal protein L35 isoform a [Ca...	262.0	[0..1]	[188..1]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASIFTGAV RAASGIFRPL NVLASSTYRN CARNACLNSS LCTIHFRHIQ TSVVSSAPRL  60
   61 VTSVGHLA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGHTTTVLNR VATLVPSVLK PPVRALTYCS TRKGKRKTVK SVVHRFLRLH SGLWLRRKAG  60
   61 YKKKLWKKST ARKKRLREFV FCSKTQSKLL DKMTTSFWKR RNWYAGDPYQ MYHDRTNLRV 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.05
Match:	2hgj7
Description:	No description for 2hgj7 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits