YRC Public Data Repository - Protein Structure Prediction

Protein:	RM35_MOUSE
Organism:	Mus musculus
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM35_MOUSE.

Description	E-value	Query Range	Subject Range
MRPL35 - mitochondrial ribosomal protein L35	317.0	[0..1]	[188..1]
gi\|55729602 - gi\|55729602\|emb\|CAH91530.1\| hypothetical protein [Pongo abelii] gi\|197100216 - gi\|197100216\|ref\|NP_001125898.1\| mitochondrial ribosomal protein L35 [Pongo abelii]	309.0	[0..1]	[188..1]
gi\|34855981, gi\|... - gi\|34855981\|ref\|XP_216169.2\| PREDICTED: similar to mitochondrial ribosomal protein L35 [Rattus norve...	303.0	[0..1]	[188..1]
RM35_BOVIN - 39S ribosomal protein L35, mitochondrial OS=Bos taurus GN=MRPL35 PE=2 SV=2	294.0	[0..1]	[188..1]
gi\|73980894 - gi\|73980894\|ref\|XP_854825.1\| PREDICTED: similar to mitochondrial ribosomal protein L35 isoform a [Ca...	262.0	[0..1]	[188..1]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASIFTGAV RAASGIFRPL NVLASSTYRN CARNACLNSS LCTIHFRHIQ TSVVSSAPRL  60
   61 VTSVGHLA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGHTTTVLNR VATLVPSVLK PPVRALTYCS TRKGKRKTVK SVVHRFLRLH SGLWLRRKAG  60
   61 YKKKLWKKST ARKKRLREFV FCSKTQSKLL DKMTTSFWKR RNWYAGDPYQ MYHDRTNLRV 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.05
Match:	2hgj7
Description:	No description for 2hgj7 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits