YRC Public Data Repository - Protein Structure Prediction

Protein:	RWDD1_MOUSE
Organism:	Mus musculus
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RWDD1_MOUSE.

Description	E-value	Query Range	Subject Range
RWDD1_RAT - RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2 SV=1	247.0	[0..1]	[243..1]
gi\|26380140 - gi\|26380140\|dbj\|BAB22678.2\| unnamed protein product [Mus musculus]	244.0	[0..1]	[243..1]
gi\|5138918 - gi\|5138918\|gb\|AAD40376.1\| PTD013 [Homo sapiens]	224.0	[0..1]	[243..1]
gi\|149722898 - gi\|149722898\|ref\|XP_001504175.1\| PREDICTED: similar to small androgen receptor-interacting protein [... gi\|73945825 - gi\|73945825\|ref\|XP_851223.1\| PREDICTED: similar to small androgen receptor-interacting protein isofo...	220.0	[0..1]	[243..1]
gi\|77736397, gi\|... - gi\|77736397\|ref\|NP_001029898.1\| RWD domain containing 1 [Bos taurus], gi\|73586715\|gb\|AAI02911.1\| RWD...	219.0	[0..1]	[243..1]
gi\|89266756, gi\|... - gi\|89266756\|emb\|CAJ83596.1\| RWD domain containing [Xenopus tropicalis], gi\|54262230\|ref\|NP_001005815...	201.0	[0..1]	[216..1]
gi\|51261494, gi\|... - gi\|51261494\|gb\|AAH80086.1\| MGC84211 protein [Xenopus laevis], gi\|148230743\|ref\|NP_001087542.1\| MGC84...	197.0	[0..1]	[240..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDYGEEQRN ELEALESIYP DSFTVLSESP PSFTITVTSE AGENDETVQT TLKFTYSEKY  60
   61 PDETPLYEIF SQENLEDNDV SDILKLLALQ AEENLGMVMI FTLVTAVQEK LNEIVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	2ebmA
Description:	No description for 2ebmA was found.

Predicted Domain #2

Region A:
Residues: [117-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QIKTRREEEK KQKEKEAEEA EKKLFHGTPV TIENFLSWKA KFDAELLEIK KKRMKEEEQA  60
   61 GKNKLSGKQL FETDHNLDTS DIQFLEDAGN NVEVDESLFQ EMDDLELEDG EDDPDYNPVA 120
  121 PGSDSSD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits