YRC Public Data Repository - Protein Structure Prediction

Protein:	RWDD1_MOUSE
Organism:	Mus musculus
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RWDD1_MOUSE.

Description	E-value	Query Range	Subject Range
RWDD1_RAT - RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2 SV=1	247.0	[0..1]	[243..1]
gi\|26380140 - gi\|26380140\|dbj\|BAB22678.2\| unnamed protein product [Mus musculus]	244.0	[0..1]	[243..1]
gi\|5138918 - gi\|5138918\|gb\|AAD40376.1\| PTD013 [Homo sapiens]	224.0	[0..1]	[243..1]
gi\|149722898 - gi\|149722898\|ref\|XP_001504175.1\| PREDICTED: similar to small androgen receptor-interacting protein [... gi\|73945825 - gi\|73945825\|ref\|XP_851223.1\| PREDICTED: similar to small androgen receptor-interacting protein isofo...	220.0	[0..1]	[243..1]
gi\|77736397, gi\|... - gi\|77736397\|ref\|NP_001029898.1\| RWD domain containing 1 [Bos taurus], gi\|73586715\|gb\|AAI02911.1\| RWD...	219.0	[0..1]	[243..1]
gi\|89266756, gi\|... - gi\|89266756\|emb\|CAJ83596.1\| RWD domain containing [Xenopus tropicalis], gi\|54262230\|ref\|NP_001005815...	201.0	[0..1]	[216..1]
gi\|51261494, gi\|... - gi\|51261494\|gb\|AAH80086.1\| MGC84211 protein [Xenopus laevis], gi\|148230743\|ref\|NP_001087542.1\| MGC84...	197.0	[0..1]	[240..1]

Back

Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDYGEEQRN ELEALESIYP DSFTVLSESP PSFTITVTSE AGENDETVQT TLKFTYSEKY  60
   61 PDETPLYEIF SQENLEDNDV SDILKLLALQ AEENLGMVMI FTLVTAVQEK LNEIVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	2ebmA
Description:	No description for 2ebmA was found.

Predicted Domain #2

Region A:
Residues: [117-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QIKTRREEEK KQKEKEAEEA EKKLFHGTPV TIENFLSWKA KFDAELLEIK KKRMKEEEQA  60
   61 GKNKLSGKQL FETDHNLDTS DIQFLEDAGN NVEVDESLFQ EMDDLELEDG EDDPDYNPVA 120
  121 PGSDSSD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.730	a.24.9	alpha-catenin/vinculin
View	Download	0.607	a.24.16	Nucleotidyltransferase substrate binding subunit/domain
View	Download	0.585	a.24.16	Nucleotidyltransferase substrate binding subunit/domain
View	Download	0.573	a.29.13	Description not found.
View	Download	0.566	a.252.1	Description not found.
View	Download	0.538	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.532	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.523	a.24.3	Cytochromes
View	Download	0.477	f.14.1	Voltage-gated potassium channels
View	Download	0.439	a.7.1	Spectrin repeat

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits