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View Structure Prediction Details

Protein: MBL1_MOUSE
Organism: Mus musculus
Length: 239 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBL1_MOUSE.

Description E-value Query
Range
Subject
Range
gi|532344, gi|11... - gi|532344|gb|AAA21000.1| aggrecan, gi|11990616|ref|NP_071526.1| aggrecan [Rattus norvegicus]
160.0 [0..12] [237..1847]
gi|37953324 - gi|37953324|gb|AAP44494.1| aggrecan [Bos taurus]
158.0 [0..12] [237..2050]
gi|57047785 - gi|57047785|ref|XP_536187.1| PREDICTED: similar to Aggrecan core protein precursor (Cartilage-specif...
154.0 [0..12] [237..2016]
gi|68533063 - gi|68533063|dbj|BAE06086.1| CSPG3 variant protein [Homo sapiens]
152.0 [0..6] [237..973]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLPLLPVL LCVVSVSSSG SQTCEDTLKT CSVIACGRDG RDGPKGEKGE PGQGLRGLQG  60
   61 PPGKLGPPGS VGSPGSPGPK GQKGDHGDNR AIEEKLANME AEIRILKSKL QL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.522879
Match: 1y0fB
Description: No description for 1y0fB was found.

Predicted Domain #2
Region A:
Residues: [113-239]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNKLHAFSMG KKSGKKLFVT NHEKMPFSKV KSLCTELQGT VAIPRNAEEN KAIQEVATGI  60
   61 AFLGITDEAT EGQFMYVTGG RLTYSNWKKD EPNNHGSGED CVIILDNGLW NDISCQASFK 120
  121 AVCEFPA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.522879
Match: 1kwtA
Description: Mannose-binding protein A, lectin domain; Mannose-binding protein A
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle