| Protein: | ccb-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 526 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ccb-1.
| Description | E-value | Query Range |
Subject Range |
|
|
361.0 | [0..1] | [526..1] |
|
Region A: Residues: [1-384] |
1 11 21 31 41 51
| | | | | |
1 MAFRRRGSGD SNFSHHDELE LEAGNRETLR RDAERQAALQ LERAKYKPVA FAVCTNVEYD 60
61 GSVDDDSPVH GCAVSFKVKD FLHIKEKYNN DWWIGRLVKE GHDLGFIPSP VKLESLRQQT 120
121 AKSGKFKQST SATNLGALDN MMPRSGSRGS TPPTPDDDEY NAKKMTNIVT TPPTKEKKKL 180
181 IFKKVQQENV PPYDVVPSMR PVVLVGPSLK GYEVTDMMQK AVFDYLKHRF EGRIIITRVT 240
241 ADISLAKRSL LNNPNKRAMM ERANSRTSNS LAEIQTEIER IFELARSMQL VVLDCDTINH 300
301 PSQLAKTSLA PIHVYIKISS PKVLQRLIKS RGKSQSRNMN VQMVAAEKLA QCQAELFDVL 360
361 LDENQLEDAC EHLADFMEAY WRAT
|
| Detection Method: |  |
| Confidence: | 69.221849 |
| Match: | 1vyvA |
| Description: | beta4 subunit of Ca2+ channel |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.821105381274365 | bayes_pls_golite062009 |
|
Region A: Residues: [385-526] |
1 11 21 31 41 51
| | | | | |
1 HPPVRSPPRI KRNPMENRGP STLFTPAQMM QGFQGNAGQL PPQLQPQQSI ASMSQMGGPM 60
61 GSMNPPYLAP PMQSGRPGMP SISVQQATGS YGGMQQQPQQ QQPMQSAPPP APQRQTSYDR 120
121 HGFDEYDDMD MSHQYERGTY RY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
