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View Structure Prediction Details

Protein: alh-6
Organism: Caenorhabditis elegans
Length: 423 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alh-6.

Description E-value Query
Range
Subject
Range
gi|52785994, gi|... - gi|52785994|ref|YP_091823.1| DhaS [Bacillus licheniformis ATCC 14580], gi|52348496|gb|AAU41130.1| Dh...
488.0 [0..2] [413..103]

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Predicted Domain #1
Region A:
Residues: [1-423]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNASTMLG QGKNIIQAEI DAACELIDFF RFNAVFAMEL EHYEPISTKI TKNTMQFRGM  60
   61 EGFVAAIAPF NFTAIGGNLP TAPALMGNVS LWKPSNTAVL SNYIIYELLE EAGMPPGILS 120
  121 FLPSDGPVFG DVITASPHLS AVNFTGSVPT FKTIWRKVAE NLDNYVTFPK LIGECGGKNF 180
  181 HFVHPSAHVD AVAAGTARSA WEYSGQKCSA CSRMYAPKSI WPKILEKISA IHKEIKLGDV 240
  241 RDGSVFLSAV IDDKAFARLK AYIDFAKTGA DGANVVLGGK CDDKTGYFIE PTLITVTDPK 300
  301 SKLLTEEMFG PVVTVLVYED SKVDEVLATV KDATPYGLTG AVFSQDKEFL YRARDVLRDA 360
  361 VGNMYLNDKS TGSIVGQQPF GGSRLSGTND KAGGPHYGLR WTSPLTIKET SVSLTDWKYP 420
  421 SME

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 1uzbA
Description: 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity 4.47226217021998 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors 4.34495776828926 bayes_pls_golite062009
succinate-semialdehyde dehydrogenase [NAD(P)+] activity 3.64672165191647 bayes_pls_golite062009
3-chloroallyl aldehyde dehydrogenase activity 3.37049090049734 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 3.2867555127991 bayes_pls_golite062009
catalytic activity 2.80804701752928 bayes_pls_golite062009
succinate-semialdehyde dehydrogenase activity 2.71501590413507 bayes_pls_golite062009
1-pyrroline-5-carboxylate dehydrogenase activity 2.6673036327943 bayes_pls_golite062009
aldehyde dehydrogenase (NAD) activity 2.26056590784818 bayes_pls_golite062009
methylmalonate-semialdehyde dehydrogenase (acylating) activity 1.59279206536309 bayes_pls_golite062009
glutamate-5-semialdehyde dehydrogenase activity 0.882678635212924 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle