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View Structure Prediction Details

Protein: CCG6_MOUSE
Organism: Mus musculus
Length: 260 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCG6_MOUSE.

Description E-value Query
Range
Subject
Range
CCG6_RAT - Voltage-dependent calcium channel gamma-6 subunit OS=Rattus norvegicus GN=Cacng6 PE=2 SV=1
250.0 [0..1] [260..1]
gi|109731952 - gi|109731952|gb|AAI15457.1| Calcium channel, voltage-dependent, gamma subunit 6 [Mus musculus]
242.0 [0..1] [260..1]
gi|194675466, gi... - gi|76642423|ref|XP_599883.2| PREDICTED: similar to Voltage-dependent calcium channel gamma-6 subunit...
223.0 [0..1] [256..2]
gi|114678977 - gi|114678977|ref|XP_001174737.1| PREDICTED: voltage-dependent calcium channel gamma-6 subunit isofor...
220.0 [0..1] [256..1]
CACNG6 - calcium channel, voltage-dependent, gamma subunit 6
gi|123997069, gi... - gi|157928982|gb|ABW03776.1| calcium channel, voltage-dependent, gamma subunit 6 [synthetic construct...
220.0 [0..1] [256..1]
gi|73947617 - gi|73947617|ref|XP_541431.2| PREDICTED: similar to Voltage-dependent calcium channel gamma-6 subunit...
215.0 [0..1] [256..1]
CCG1_PIG - Voltage-dependent calcium channel gamma-1 subunit OS=Sus scrofa GN=CACNG1 PE=2 SV=1
209.0 [0..31] [250..1]
CCG1_RABIT - Voltage-dependent calcium channel gamma-1 subunit OS=Oryctolagus cuniculus GN=CACNG1 PE=1 SV=1
207.0 [0..31] [250..1]
gi|50757857 - gi|50757857|ref|XP_415680.1| PREDICTED: similar to Voltage-dependent calcium channel gamma-1 subunit...
195.0 [0..30] [250..259]

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Predicted Domain #1
Region A:
Residues: [1-67]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMWSNFFMQE EDRRRTAVGR RRAQEQQNLG LTPEREGKIK LGLLVAIVGA TLAVLAVGTE  60
   61 FWVELNT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [68-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKTNGSAVCE AAHLGLWKVC IKRLWQADVP AGRETCGPAE LPGEANCTYF KFFTTGENAR  60
   61 IFQRTTKKEV NLAAAVIAVL GLTAMALGCL CVIMVLSKGA ESLLRLGAVC FGLSGLLLFV 120
  121 SLEVFRHSVG ALLQGVNPET PPAPRLAYEY SWSLGCGVGA GLILLLGGVC FLLLTLPSWP 180
  181 WRSLCPKWGG PTA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle