YRC Public Data Repository - Protein Structure Prediction

Protein:	COPZ1_MOUSE
Organism:	Mus musculus
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COPZ1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73966201 - gi\|73966201\|ref\|XP_548170.2\| PREDICTED: similar to Coatomer zeta-2 subunit (Zeta-2 coat protein) (Ze...	4.0E-50	[5..177]	[75..247]
gi\|29126980 - gi\|29126980\|gb\|AAH47988.1\| Copz1 protein [Xenopus laevis]	3.0E-49	[1..177]	[11..187]
gi\|109481384, gi... - ref\|XP_235705.2\| similar to Coatomer zeta-1 subunit (Zeta-1 coat protein) (Zeta-1 COP) (CGI-120) (HS...	6.0E-49	[1..177]	[33..209]
gi\|62901818 - gi\|62901818\|gb\|AAY18860.1\| CGI-120 [synthetic construct]	1.0E-48	[2..177]	[13..188]
gi\|109097037 - gi\|109097037\|ref\|XP_001109692.1\| PREDICTED: similar to Coatomer subunit zeta-1 (Zeta-1 coat protein)...	2.0E-48	[5..177]	[25..197]
gi\|89272725 - gi\|89272725\|emb\|CAJ83159.1\| copz1 [Xenopus tropicalis]	4.0E-48	[1..177]	[1..177]
gi\|7259356, gi\|1... - gi\|7259356\|dbj\|BAA92783.1\| nonclathrin coat protein zeta1-COP [Danio rerio], gi\|18858455\|ref\|NP_5715...	4.0E-48	[1..177]	[1..177]
gi\|62897937 - gi\|62897937\|dbj\|BAD96908.1\| coatomer protein complex, subunit zeta 1 variant [Homo sapiens]	1.0E-47	[1..177]	[1..177]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALILEPSL YTVKAILILD NDGDRLFAKY YDDTYPSVKE QKAFEKNIFN KTHRTDSEIA  60
   61 LLEGLTVVYK SSIDLYFYVI GSSYENELML MAVLNCLFDS LSQMLRKNVE KRALLENMEG 120
  121 LFLAVDEIVD GGVILESDPQ QVVHRVALRG EDVPLTEQTV SQVLQSAKEQ IKWSLLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2hf6A
Description:	No description for 2hf6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits