YRC Public Data Repository - Protein Structure Prediction

Protein:	YC93_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	551 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YC93_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|45190310, gi\|... - gi\|45190310\|ref\|NP_984564.1\| AEL296Wp [Ashbya gossypii ATCC 10895], gi\|44983206\|gb\|AAS52388.1\| AEL29... gi\|44983206 - gi\|44983206\|gb\|AAS52388.1\| AEL296Wp [Ashbya gossypii ATCC 10895]	510.0	[0..1]	[439..1]
YRB30 - RanGTP-binding protein, inhibits RanGAP1 (Rna1p)-mediated GTP hydrolysis of RanGTP (Gsp1p); shares s... YRB30_YEAST - Ran-specific GTPase-activating protein 30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... gi\|207345465 - gi\|207345465\|gb\|EDZ72282.1\| YGL164Cp-like protein [Saccharomyces cerevisiae AWRI1631]	470.0	[0..1]	[437..1]
YA4A_SCHPO - Uncharacterized protein C31A2.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC31A2.... SPAC31A2.10 - RanGTP-binding protein	420.0	[0..1]	[415..1]
gi\|2130421 - gi\|2130421\|pir\|\|S58104 hypothetical protein SPAC31A2.10 - fission yeast (Schizosaccharomyces pombe)	414.0	[0..1]	[415..1]
gi\|25465828 - gi\|25465828\|pir\|\|T51895 hypothetical protein B23I11.70 [imported] - Neurospora crassa	403.0	[0..1]	[384..1]
gi\|32407098, gi\|... - gi\|32407098\|ref\|XP_324146.1\| hypothetical protein [Neurospora crassa], gi\|28921906\|gb\|EAA31179.1\| hy... gi\|85097290 - gi\|85097290\|ref\|XP_960415.1\| hypothetical protein [Neurospora crassa OR74A]	388.0	[0..1]	[384..1]
gi\|39974811, gi\|... - gi\|39974811\|ref\|XP_368796.1\| hypothetical protein MG00448.4 [Magnaporthe grisea 70-15], gb\|EAA48790....	388.0	[0..19]	[352..2]
gi\|42549789, gi\|... - gi\|46128453\|ref\|XP_388780.1\| hypothetical protein FG08604.1 [Gibberella zeae PH-1], gi\|42549789\|gb\|E...	386.0	[0..1]	[348..1]
gi\|49088882, gi\|... - gi\|67523249\|ref\|XP_659685.1\| hypothetical protein AN2081.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	386.0	[0..1]	[346..1]
gi\|49526741, gi\|... - gi\|50289999\|ref\|XP_447431.1\| hypothetical protein CAGL0I04202g [Candida glabrata CBS138], gi\|4952674... gi\|49526741 - gi\|49526741\|emb\|CAG60368.1\| unnamed protein product [Candida glabrata]	382.0	[0..1]	[437..1]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDELLNVASH AATFATNFAL KHSISFAGKL AVQQVSSYIK RASADDQSEL ESVKTQLLEM  60
   61 IRVVTPAIEL IEIMSVGENE NFKSTKQLVD SLHADIEQFT KHVLSAAHSE FPPSSEKETL 120
  121 QKNVDTSILR EMKTLLLKIN DAVPLLNLSI TTSGASISSS LPKSTSFSQL LRANSYIYRA 180
  181 NVAFTGNEPL QVGPTFFLRT YKIIDNHAKS GYISNDLVMW KEEMPVCIAK MFRM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [235-442]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPQRLKSKDT VLAYALSLKQ SFDDDRYHDE DETPVTKTIS LNDVRTLFFS LSGKLLRLDD  60
   61 VQTPVLLLKY ADDETEYSSN TAPSNWIALE ALPLVSIPNE SLDESDELAE SLSDSEAARL 120
  121 QLLGIKKQES VAKKKSSFPS TIKDQPNLTL LEYLIRLCAL ESTTQESVLQ LPDEQIALYL 180
  181 KDYQGRERPR DPASYNALEN RSELSASP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [443-551]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSVSSSRHSG IFATPTFLSP WNIKNIPLVT PEVSTRQTKN VDEEDSALLM ASPSVRKSNL  60
   61 LPQEDLISKD SVIKLKENPS VIPHSEPESS SKVINCQAKL NVEKEKKNP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits