YRC Public Data Repository - Protein Structure Prediction

Protein:	YJMD_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	669 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJMD_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|18375986, gi\|... - gi\|32413236\|ref\|XP_327098.1\| phosphatidic acid-preferring phospholipase A1 related protein [MIPS] [N... gi\|85110830 - gi\|85110830\|ref\|XP_963653.1\| hypothetical protein NCU06812 [Neurospora crassa OR74A]	608.0	[0..1]	[667..259]
gi\|49110407, gi\|... - gi\|67901234\|ref\|XP_680873.1\| hypothetical protein AN7604.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	554.0	[0..23]	[659..273]
gi\|145015894, gi... - gi\|39942102\|ref\|XP_360588.1\| hypothetical protein MGG_03131 [Magnaporthe grisea 70-15], gb\|EAA51536....	550.0	[0..66]	[659..362]
YDK2_SCHPO - Probable phospholipase C20G8.02, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843... SPAC20G8.02 - phospholipase	524.0	[0..1]	[643..84]
gi\|73962947 - gi\|73962947\|ref\|XP_864066.1\| PREDICTED: similar to DDHD domain containing 1 isoform 2 [Canis familia...	518.0	[0..5]	[657..166]
gi\|111955152 - gi\|111955152\|ref\|NP_001034195.2\| DDHD domain containing 1 isoform 1 [Mus musculus]	518.0	[0..5]	[655..147]
DDHD1_BOVIN - Phospholipase DDHD1 OS=Bos taurus GN=DDHD1 PE=1 SV=1	518.0	[0..5]	[657..160]
gi\|109083639 - gi\|109083639\|ref\|XP_001083968.1\| PREDICTED: similar to DDHD domain containing 1 isoform 3 [Macaca mu...	517.0	[0..5]	[657..159]
gi\|74271909, gi\|... - gi\|74271909\|ref\|NP_001028238.1\| DDHD domain containing 1 [Rattus norvegicus], gi\|73909173\|gb\|AAI0365...	516.0	[0..5]	[656..147]
gi\|114653070, gi... - gi\|114653072\|ref\|XP_001160076.1\| PREDICTED: DDHD domain containing 1 [Pan troglodytes], gi\|114653070...	515.0	[0..5]	[657..164]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQESSQEEPV HYVQWFYLSN YDLYDETSSM ELTGAQSWRR FLNYDNNALE AKYNEIITEE  60
   61 VSQEPNQKNV IVGISGLHVV NLPTLTLKPL YWPSASKNDT LRVVRGLWMY EDTGLPVINE 120
  121 LSDMLEEGYQ EVKPYAV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [138-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NWDNVLKEEE EGKDSQDDPS VLSHKRNKSS KELIDAMQWP LKPTSSGKYV FYEDGYRALI  60
   61 CQGGLLSYFS KGTQSRRTSI KGMPVVRDFP YFEDDGFN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [236-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPKQVTDLFL VVHGIGQKRS ETEERFLFTK TCNVFRSLIQ IQKNIMKEDP LIRNDYEPQL  60
   61 LPICW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [301-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNKLNFNSYI KPVAGDEGRV EDEEFEENRF SIEDIEIDSI PAVRRLLGDV MSDIPYYMSH  60
   61 HKESIIKSVI REANRVYHLW KDCNPYFLEN KGRIFIIGHS LGSTVVFDIL SLQPTFVKEI 120
  121 TIDDDESCFI FDT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [434-669]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGFFCFGGPV GFFLHLNQQS IIPRRGRGSS RYEINKNFIN SDVPKSYTYD GYDRYGCLAV  60
   61 DSFYNIYNHL DPVAMRLNPT VDLSFSKGIH PTRILFTRKS SSILRMISHS NTDPVELRSY 120
  121 NQSLQQNKNN EPTAVVPLEP EQTVELETRN FRREERAKWR MQELNENSQL DYVFTSAHGV 180
  181 ISNKYLSMLS AHSSYWSSED LACFLVVETG RNFGIANSIE QFRGKHMPRI FKGDSS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	76.744727
Match:	PF02862.8
Description:	No description for PF02862.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits