YRC Public Data Repository - Protein Structure Prediction

Protein:	YBH4_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	867 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBH4_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|115390913, gi... - gi\|115390913\|ref\|XP_001212961.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	342.0	[0..1]	[866..522]
gi\|40747412, gi\|... - gi\|67516375\|ref\|XP_658073.1\| hypothetical protein AN0469.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	335.0	[0..1]	[866..258]
gi\|85078865 - gi\|85078865\|ref\|XP_956243.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28917298, gi\|... - gi\|32414999\|ref\|XP_327979.1\| hypothetical protein [Neurospora crassa], gi\|28917298\|gb\|EAA27007.1\| hy...	333.0	[0..1]	[867..161]
gi\|111063706, gi... - gi\|169608556\|ref\|XP_001797697.1\| hypothetical protein SNOG_07360 [Phaeosphaeria nodorum SN15], gi\|11...	331.0	[0..1]	[867..89]
gi\|90304326, gi\|... - gi\|90304326\|gb\|EAS33957.1\| hypothetical protein CIMG_04981 [Coccidioides immitis RS], gi\|119189867\|r...	327.0	[0..10]	[859..197]
gi\|46435269, gi\|... - gi\|68484664\|ref\|XP_713723.1\| hypothetical protein CaO19.11147 [Candida albicans SC5314], gi\|68484595... orf19.11147, orf... - PHO91 CGDID:CAL0000434 Assembly 19, Contig19-10186 (6010, 3428) CDS, reverse complemented, translate...	326.0	[0..1]	[867..1]
gi\|18376151 - gi\|18376151\|emb\|CAD21226.1\| related to PHO87 protein [Neurospora crassa]	314.0	[0..1]	[866..1]
gi\|45199146, gi\|... - gi\|45199146\|ref\|NP_986175.1\| AFR628Cp [Ashbya gossypii ATCC 10895], gi\|44985286\|gb\|AAS53999.1\| AFR62... gi\|44985286 - gi\|44985286\|gb\|AAS53999.1\| AFR628Cp [Ashbya gossypii ATCC 10895]	313.0	[0..1]	[862..1]
gi\|28564860 - gi\|28564860\|gb\|AAO32514.1\| PHO87 [Saccharomyces castellii]	313.0	[0..1]	[859..1]
gi\|116199663, gi... - gi\|88179266\|gb\|EAQ86734.1\| hypothetical protein CHGG_07987 [Chaetomium globosum CBS 148.51], gi\|1161...	312.0	[0..1]	[866..127]

Back

Predicted Domain #1

Region A:
Residues: [1-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSHSLQFN AVPEWSESYI AYSNLKKLIY SLEHEQITLQ QGAPDEETRL LEHERRSPDD  60
   61 RFMFALDKEL QGIVEFYAPK EKEIADQYGR IKGEFETYEN EYMSQGNNIN YPTPERLQKS 120
  121 SASRKSGRMA RSQELPRITS SNREIYLNGQ TSDGGYAAPA ISRAESTAIQ PSEPHDVDTS 180
  181 KNGLSKKQHS EAQPEVQGND DEVEEEDDDD DDEDEDEDED EDNNNNNRWL LIEQYPSDIV 240
  241 AYENFVSLKR KLTQLYVSIH DLISYVHLNY TGFSKILKKY DKTLGSSLRE SYMKRVNQAY 300
  301 P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [302-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLPATGKTLS KRLNIVAEWY AKLCCQGDTF VAIRRLRGHL REYVAWERNT IWREMMAMER  60
   61 RTQAARLSGL KPVAADEKES

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [382-867]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQPPYFTIKT KFGVFRIPRC FFNSTIATLI TIIVIFILLL SFPVIDNREQ NNCLALLVMV  60
   61 SLLWATEAIP LFVTSFLVPF MTVFLKILRD ENGSPLSGKE STKVIFSSMW NPTIVLLLGG 120
  121 FTIAAALSKY HIAKRLATSI LAHAGRKPRS VLLTNMFVAM FASMWISNVA APVLCFSIIQ 180
  181 PLLRNLPAES DFAKILIVGI ALASNVGGIA SPISSPQNIV ALQNMDPAAG WGEWFAVSIP 240
  241 VSLLCIFSIW FLLSFGLLKD EHITLAKIRS TKDTFTGVQW FISIVTIGTI VLWCLERRFD 300
  301 EVFGDMGVIA LVPIIVFFGT GLLTKEDFNN FLWTVIVLAM GGVALGKVVS SSGLLELIAL 360
  361 KIGNAVSSLN TFRVLLIFSA LTLVVSSFIS HIVAAMVVLP IVHEVGSRLA DPHPRLFVLA 420
  421 SGMMCSLAMA LPTSGFPNMT AIMMENEAGK RYLKVSDFLK AGIPATLISF VILLLIGTPI 480
  481 MRALGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.154902
Match:	1m56A
Description:	Bacterial aa3 type cytochrome c oxidase subunit I
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ion transmembrane transporter activity	6.40081133240949	bayes_pls_golite062009
cation transmembrane transporter activity	6.07151695779993	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.9695962563814	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	5.70388681170981	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.36384130014444	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.25497087659898	bayes_pls_golite062009
transporter activity	4.2806100513341	bayes_pls_golite062009
transmembrane transporter activity	4.19885907933483	bayes_pls_golite062009
substrate-specific transporter activity	4.09889747645813	bayes_pls_golite062009
heme-copper terminal oxidase activity	1.27735515053931	bayes_pls_golite062009
binding	0.89004160546195	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	0.803860393147327	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	0.803860393147327	bayes_pls_golite062009
cytochrome-c oxidase activity	0.803860393147327	bayes_pls_golite062009
protein binding	0.358081002328109	bayes_pls_golite062009
active transmembrane transporter activity	0.349031670056176	bayes_pls_golite062009
primary active transmembrane transporter activity	0.336122020727214	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: