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View Structure Prediction Details

Protein: CTU1_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 335 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTU1_SCHPO.

Description E-value Query
Range		 Subject
Range
CTU1_ORYSJ - Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza sativa subsp. japonica GN=NCS6 PE=2 SV=1
 239.0 [0..3] [321..17]
CTU1_ARATH - Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=2
 238.0 [0..2] [321..10]
gi|220950426 - gi|220950426|gb|ACL87756.1| CG8078-PA [synthetic construct]
CG8078-PA - This gene is referred to in FlyBase by the symbol Dmel\CG8078 (CG8078, FBgn0033375). It is a protein...
 232.0 [0..7] [330..7]
CTU1_XENTR - Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus tropicalis GN=ctu1 PE=2 SV=1
 232.0 [0..3] [318..2]
CTU1_DANRE - Cytoplasmic tRNA 2-thiolation protein 1 OS=Danio rerio GN=ctu1 PE=2 SV=1
 230.0 [0..3] [331..2]
CTU1_XENLA - Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus laevis GN=ctu1 PE=2 SV=1
 226.0 [0..3] [318..2]
gi|91093715 - gi|91093715|ref|XP_967465.1| PREDICTED: similar to CG8078 CG8078-PA [Tribolium castaneum]
 225.0 [0..6] [333..4]
CTU1_USTMA - Cytoplasmic tRNA 2-thiolation protein 1 OS=Ustilago maydis GN=NCS6 PE=3 SV=1
CTU1_USTMA - Cytoplasmic tRNA 2-thiolation protein 1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=NCS6 PE=3 SV=...
 224.0 [0..1] [335..1]

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Predicted Domain #1
Region A:
Residues: [1-335] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKLCQLCN ERRPALVRPK TGQKICKECF YYVFETEIHN VIIENKLFVR GERVGIGASG  60
   61 GKDSTVLAYV MKLLNERYDY GLELYLISVD EGIRGYRDDS LDTVKRNQQQ YGLPMKIVSY 120
  121 ADLYDGWTMD NVVARIGTKN NCTYCGVFRR QALDRAALSL DIHHLVTGHN ADDIAETILM 180
  181 NLLRGDVARL PRSTEITTQS DSSPTKRSKP FKYSYEKEIV LYAHYKKLDY FSTECTYSPE 240
  241 AFRGTARAMI KQLENIRPSS ILDIIYSGES MQLASSVQEQ LPQQTTCERC GFISSNRICK 300
  301 ACMLLEGLNK GITGLGLGSD RKTKKLQSQI PACAE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.69897
Match: 1gpmA
Description: GMP synthetase; GMP synthetase, central domain; GMP synthetase C-terminal dimerisation domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ligase activity, forming carbon-nitrogen bonds 4.5241303311086 bayes_pls_golite062009
ligase activity 3.71561290487771 bayes_pls_golite062009
DNA binding 1.07561751049838 bayes_pls_golite062009
nucleic acid binding 1.0681685328021 bayes_pls_golite062009
binding 0.915602461727954 bayes_pls_golite062009
catalytic activity 0.828867994386867 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.475055910258246 bayes_pls_golite062009
transferase activity 0.0776944314618701 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle