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Protein Overview: CTU1_ORYSJ

General Information:
Name(s) found: CTU1_ORYSJ [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza sativa subsp. japonica GN=NCS6 PE=2 SV=1 [Swiss-Prot]
    • Organism: Oryza sativa Japonica Group
    Length: 363 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSAVDGPRQ PPARAGSRLC TRCGERKAAL KRPKTLEQIC RECFYVVFED EIHQTIVDNN  60
   61 LFKPGDRVAI GASGGKDSTV LAYVLSELNR RHKYCLDLFL LSVDEGITGY RDDSLETVKR 120
  121 NEIQYGLPLK IVSYKDLYGW TMDDIVKAIG LKNNCTFCGV FRRQALDRGA ALLKVDKIVT 180
  181 GHNADDIAET VLLNILRGDI ARLSRCTFIT TGEDGPIPRC KPFKYTYEKE IVMYAYFKKL 240
  241 DYFSTECIYS PNAYRGFARE FIKDLERMRP RAILDIIKSG ENFRISTTTR MPEQGTCERC 300
  301 GYISSQKLCK ACVLLDGLNR GLPKLGIGRT KGIAGGDGDC EQQATRSERN RSSLQGKHGN 360
  361 FDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..294] PSI-BLAST 47.30103 GMP synthetase; GMP synthetase, central domain; GMP synthetase C-terminal dimerisation domain
    2 View Details [295..363] PSI-BLAST 46.30103 Crystal structure of Argininosuccinate synthase (TM1780) from Thermotoga maritima at 1.65 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-nitrogen bonds
    		•  4.5241303311086 bayes_pls_golite062009
  • ligase activity
    		•  3.71561290487771 bayes_pls_golite062009
  • DNA binding
    		•  1.07561751049838 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.0681685328021 bayes_pls_golite062009
  • binding
    		•  0.915602461727954 bayes_pls_golite062009
  • catalytic activity
    		•  0.828867994386867 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.475055910258246 bayes_pls_golite062009
  • transferase activity
    		•  0.0776944314618701 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle