YRC Public Data Repository - Protein Structure Prediction

Protein:	NSA1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NSA1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	393.0	[0..3]	[385..1187]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	380.0	[0..3]	[386..1101]
gi\|17225204 - gi\|17225204\|gb\|AAL37298.1\|AF323582_1 beta transducin-like protein HET-E2C [Podospora anserina]	374.0	[0..2]	[385..855]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	372.0	[0..3]	[386..1047]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	369.0	[0..4]	[386..623]

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Predicted Domain #1

Region A:
Residues: [1-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLLGDEIG QLKFIEIKKG TDTSNPESEA PVIQKFGELD REKGVLFMLK HEMNVFVARK  60
   61 NGTIECWNVN QEPPILSSLW QLDSSLLETA SIVSMKYSNG WLMLALSDGN LLFRHIESSK 120
  121 LRKLQLHGPL SAVELHPRIP GIIAAGGKEN DVCLYSCNPT CKSNIDELEL WRTENVVKVF 180
  181 QGKNVKNDSL NLRVRVWITG IVFTEDIINV IDGKSEDDES LCFHFATITH YGQLRFYDTK 240
  241 HGRRPVSTFD VSTSPLSHVG LLPSIKLLYF ADKRAQISIF DHSKKKVIGR FQGVKGAPSS 300
  301 IHCLGNVVAI TGLDRNVRIF DADRKPLANA YIKALPTSII VINERDAEII KKEEELEAAK 360
  361 EEEEEIWRNM EQLEDTEDKK PSKRIKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.39794
Match:	2ovpB
Description:	No description for 2ovpB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits