YRC Public Data Repository - Protein Structure Prediction

Protein:	YGDF_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	497 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGDF_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|67903516, gi\|... - gi\|67903516\|ref\|XP_682014.1\| hypothetical protein AN8745.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	227.0	[0..13]	[494..4]
gi\|67668083, gi\|... - gi\|67668083\|ref\|ZP_00465278.1\| General substrate transporter:Major facilitator superfamily [Burkhold...	220.0	[0..17]	[469..1010]
gi\|49527412 - gi\|49527412\|emb\|CAG61052.1\| unnamed protein product [Candida glabrata] gi\|50291337, gi\|... - gi\|50291337\|ref\|XP_448101.1\| unnamed protein product [Candida glabrata], gi\|49527412\|emb\|CAG61052.1\|...	211.0	[0..4]	[475..74]
gi\|90307566, gi\|... - gi\|90307566\|gb\|EAS37197.1\| hypothetical protein CIMG_02551 [Coccidioides immitis RS], gi\|119196353\|r...	204.0	[0..2]	[476..205]
SNF3 - Plasma membrane low glucose sensor that regulates glucose transport; contains 12 predicted transmemb... SNF3_YEAST - High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=S...	204.0	[0..3]	[493..45]
gi\|38104993, gi\|... - gi\|39969567\|ref\|XP_366174.1\| hypothetical protein MG10393.4 [Magnaporthe grisea 70-15], gb\|EAA51477....	203.0	[0..1]	[496..1]
gi\|169764102 - gi\|169764102\|ref\|XP_001727951.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83770979 - gi\|83770979\|dbj\|BAE61112.1\| unnamed protein product [Aspergillus oryzae]	202.0	[0..2]	[476..164]
gi\|85110133 - gi\|85110133\|ref\|XP_963279.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28924953, gi\|... - gi\|32417950\|ref\|XP_329453.1\| hypothetical protein [Neurospora crassa], gi\|28924953\|gb\|EAA34043.1\| hy...	200.0	[0..6]	[497..337]

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Predicted Domain #1

Region A:
Residues: [1-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKTEEENYS IKELGEKGSD SQEDVAVIFA EKHPIIDKSL NRKLKLKTDL WVMPLLCLIS  60
   61 AFQYMDKSTS NYSSIMGIRT DLNMVGNQYN WVGTSFYLGF MVFSLPLSTL LQKFPLSKVT 120
  121 SAFIVAWGIL MTLTCLVHSY ASYIATRTLL GILESVITPA FVLFIAQWYR KEEQFFRMAF 180
  181 LVAWNGLGGL IGGSMSYGLY KRELENNLTM SPWRILFIIT GLITIINGVF IFIHIPDEPS 240
  241 KAWFLSEKEK DLVLKRLDTD HAGLGSKKFK KYQILEACRD VRMYLYFFLQ IAVAIPNGGL 300
  301 SNFSSIMLKN LGYVKGKALL MNMPTSSISF AALTLFGLIP EFTNRRMDIA LVGLAINLTS 360
  361 GSLIAFAKPT HAQLAGYWLF GISPIPYICI LSCISSNSAG HTKKVFMSAV SMIGYCVGNM 420
  421 VGPQTFRSTQ APKYQGAKVS FVVCYCVAIF IIIAIYAVNV RENRRRDEKN EYLSNELSEE 480
  481 DKKDLTDFEN PEFRYSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.39794
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	5.46247398538901	bayes_pls_golite062009
ion transmembrane transporter activity	4.58978526526921	bayes_pls_golite062009
transporter activity	4.09176719149278	bayes_pls_golite062009
anion transmembrane transporter activity	3.94605227012838	bayes_pls_golite062009
cation transmembrane transporter activity	3.88180006470231	bayes_pls_golite062009
substrate-specific transporter activity	3.59744164024479	bayes_pls_golite062009
transmembrane transporter activity	3.5865018981083	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	2.52916479889426	bayes_pls_golite062009
organic acid transmembrane transporter activity	2.15783210522667	bayes_pls_golite062009
active transmembrane transporter activity	1.59419818573076	bayes_pls_golite062009
secondary active transmembrane transporter activity	1.22264637452409	bayes_pls_golite062009
polyol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
alcohol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
binding	0.873217664940684	bayes_pls_golite062009
glycerol transmembrane transporter activity	0.812001619402678	bayes_pls_golite062009
symporter activity	0.74591237387473	bayes_pls_golite062009
solute:cation symporter activity	0.74591237387473	bayes_pls_golite062009
phosphate transmembrane transporter activity	0.312628600969375	bayes_pls_golite062009
cation:sugar symporter activity	0.143419068761182	bayes_pls_golite062009
sugar:hydrogen symporter activity	0.143419068761182	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: