YRC Public Data Repository - Protein Structure Prediction

Protein:	YGD8_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	391 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGD8_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|85109183 - gi\|85109183\|ref\|XP_962794.1\| hypothetical protein NCU05680 [Neurospora crassa OR74A] gi\|32410109, gi\|... - gi\|32410109\|ref\|XP_325535.1\| hypothetical protein [Neurospora crassa], gi\|28924428\|gb\|EAA33558.1\| hy...	549.0	[0..13]	[385..92]
gi\|145017887, gi... - gi\|39973427\|ref\|XP_368104.1\| alpha-1,2-mannosyltransferase Kre5 [Magnaporthe grisea 70-15], gb\|EAA49...	542.0	[0..13]	[385..93]
gi\|49083972, gi\|... - gi\|67515609\|ref\|XP_657690.1\| hypothetical protein AN0086.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	533.0	[0..13]	[385..88]
gi\|119174492, gi... - gi\|90298393\|gb\|EAS28024.1\| hypothetical protein CIMG_09228 [Coccidioides immitis RS], gi\|119174492\|r...	530.0	[0..13]	[385..89]
gi\|159126838 - gi\|159126838\|gb\|EDP51954.1\| alpha-1,2-mannosyltransferase (Kre5), putative [Aspergillus fumigatus A1... gi\|66851071, gi\|... - gi\|70997373\|ref\|XP_753435.1\| alpha-1,2-mannosyltransferase (Kre5) [Aspergillus fumigatus Af293], gi\|...	523.0	[0..13]	[385..88]
gi\|46111665, gi\|... - gi\|46111665\|ref\|XP_382890.1\| hypothetical protein FG02714.1 [Gibberella zeae PH-1], gi\|42545119\|gb\|E...	523.0	[0..13]	[385..93]
gi\|114195319, gi... - gi\|115387459\|ref\|XP_001211235.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	522.0	[0..13]	[385..88]
gi\|169779185 - gi\|169779185\|ref\|XP_001824057.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83772796 - gi\|83772796\|dbj\|BAE62924.1\| unnamed protein product [Aspergillus oryzae]	513.0	[0..18]	[385..90]
gi\|88181289, gi\|... - gi\|88181289\|gb\|EAQ88757.1\| hypothetical protein CHGG_05376 [Chaetomium globosum CBS 148.51], gi\|1161...	511.0	[0..13]	[385..7]
gi\|19112406 - gi\|19112406\|ref\|NP_595614.1\| alpha-1,2 mannosyltransferase [Schizosaccharomyces pombe 972h-] SPBC32H8.08c - mannosyltransferase complex subunit	510.0	[0..8]	[391..66]

Back

Predicted Domain #1

Region A:
Residues: [1-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYKQLIYKL NHPPLRRIDE RNDPLFSNGC KNVHLEAQLH PRMNATFVML ARNSDLPGVV  60
   61 SSINSLEKHF NRHFNYPYTF LNDEPFDEKF KETILKLTSA NVEFGTLEKD TFGFPGNVDV 120
  121 DAAREAIASQ GDRGIMYGDT ESYHHMCRFF SGFFYKHPLL LKYQWYWRVE PDVAFTCDIS 180
  181 YDPFYYMEEN GKIYGYVVAL KELEDTVPNL FRYTSAYRRN NNLTSNMWKF FLDAPKKENY 240
  241 DISRKDPTVG LSFSSHLNAM IDSSYSAETS SMEGESYNMC HFWSNFEIAN FKFFRNEQYE 300
  301 NFFRTMDATG GFWTERWGDA PFHSLAAGLF LSKEQVHYFR DLGYRHSDIH HCGQSLGCNC 360
  361 ECIPELSEIE STSGGCVTQW VNLIGDGFLD E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	122.0
Match:	1s4nA
Description:	Crystal structure of yeast alpha1,2-mannosyltransferase Kre2p/Mnt1p
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
alpha-1,2-mannosyltransferase activity	6.0576932895264	bayes_pls_golite062009
mannosyltransferase activity	5.57855076532185	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	4.49413422196176	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	4.37944217610823	bayes_pls_golite062009
UDP-glycosyltransferase activity	4.08451171179562	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	3.4614674054855	bayes_pls_golite062009
transferase activity	3.32517438937547	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	3.19923094610567	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.51696952719873	bayes_pls_golite062009
nucleotidyltransferase activity	2.00651267140641	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
uridylyltransferase activity	1.27888067902271	bayes_pls_golite062009
binding	1.09657219604879	bayes_pls_golite062009
glucuronosyltransferase activity	0.36353543999278	bayes_pls_golite062009
UDP-galactosyltransferase activity	0.10185872015123	bayes_pls_golite062009
galactosyltransferase activity	0.0931461042017721	bayes_pls_golite062009
acetylglucosaminyltransferase activity	0.0562130308868509	bayes_pls_golite062009
alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.0339369954475406	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.0122078907283503	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: