YRC Public Data Repository - Protein Structure Prediction

Protein:	YGD1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	612 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGD1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	360.0	[0..178]	[610..220]
gi\|23128312, gi\|... - gi\|23128312\|ref\|ZP_00110163.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668169...	348.0	[0..179]	[607..704]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	346.0	[0..143]	[610..1059]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	345.0	[0..178]	[607..757]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	340.0	[0..178]	[610..861]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSNLSLKRQ DEKRADKEPN LYTLQGVIQY LQYEAFKNER DHNLWEIERA ELKIRVAQLE  60
   61 RERAKLEQSL SFQQRRAEML EKSLRELRKD KNISVKDLDE FHLLDKPAAN NTKADA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.045757
Match:	2i1jA
Description:	No description for 2i1jA was found.

Predicted Domain #2

Region A:
Residues: [117-612]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EACLLKSKNY IKKSLQEIVY LTNMQPNVSW NVLQEPTRGI KVPKESNNTQ QNNQFVMEPS  60
   61 QNKGNVNDAN FFEVEYARNE NMNKLSSSEL ISDDLLEDEI MKPLSSGESL PKKEEEVTKS 120
  121 PSFTLDDSVA SNEQTLAQLN IESPVDQKKS KAKKKKEQKW TLKFESDKGT STQCITHQPL 180
  181 PGSTPSFASG TENGVINVWR LDEDSNDNSM GIIKPHLTFY GHEGPVLCVC VPKATHHIFS 240
  241 GGHDGTIRCW SLPANQTSDS ISKILTGSTI FQGHEDCVWE LFCHEVKDNN PILLSLSSDG 300
  301 TVRGWKYTGE QLFKIRCDSK QPLSMSVTDS RIAIAYNDGN VRFYDLDTQI LVSQMRIAGN 360
  361 SAIGNPAVKD RINKIVWKNG NPDRLYSLHE NGMVRVFDVK SEELLAEKSI SKVSLTGIAF 420
  421 AVNRPEFAIS ASDGRVFFLR QDDKLSTLES LPSREAQEEI TDLSDILWIN SPVDKLEHLI 480
  481 VGCKERISVY DRKYLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	2ovpB
Description:	No description for 2ovpB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits