YRC Public Data Repository - Protein Structure Prediction

Protein:	OTU2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	324 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OTU2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|57108027 - gi\|57108027\|ref\|XP_544171.1\| PREDICTED: similar to CG7857-PA [Canis familiaris]	161.0	[0..30]	[320..115]
gi\|109476175, gi... - gi\|157820311\|ref\|NP_001100109.1\| OTU domain containing 6B [Rattus norvegicus], gi\|149045466\|gb\|EDL98...	149.0	[0..14]	[321..32]
gi\|83001000, gi\|... - gi\|94408704\|ref\|XP_988698.1\| PREDICTED: similar to OTU domain containing 6B isoform 2 [Mus musculus]...	145.0	[0..32]	[320..19]
gi\|76630286 - gi\|76630286\|ref\|XP_874339.1\| PREDICTED: similar to CG7857-PA [Bos taurus]	135.0	[0..14]	[321..1]
gi\|94496140, gi\|... - gi\|94496140\|ref\|ZP_01302718.1\| AAA ATPase, central region [Sphingomonas sp. SKA58], gi\|94424319\|gb\|E...	135.0	[0..1]	[229..423]
gi\|98977949, gi\|... - gi\|98977949\|gb\|ABF54100.1\| ATPase AAA-2 [Sphingopyxis alaskensis RB2256], gi\|68537287\|ref\|ZP_0057706...	134.0	[0..1]	[229..423]
OTUD6A - OTU domain containing 6A	133.0	[0..24]	[320..7]
gi\|163848669, gi... - gi\|76260724\|ref\|ZP_00768354.1\| AAA ATPase, central region:Clp, N terminal:Clp, N terminal [Chlorofle... gi\|222526605, gi... - gi\|222526605\|ref\|YP_002571076.1\| ATP-dependent chaperone ClpB [Chloroflexus sp. Y-400-fl], gi\|222450...	132.0	[0..1]	[229..422]
gi\|67153835 - gi\|67153835\|ref\|ZP_00415580.1\| AAA ATPase, central region:Clp, N terminal [Azotobacter vinelandii Av... gi\|67087968, gi\|... - gi\|67153835\|ref\|ZP_00415580.1\| AAA ATPase, central region:Clp, N terminal [Azotobacter vinelandii Av...	130.0	[0..1]	[229..512]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCPLAYYYT QTTIPTQQKR KSKKMEELLS KQREECKELQ SKITNLRKQL KEGNKKQKRA  60
   61 LQQKISQMEA DLSQKHATER QKLDKGDEET NETQQEDLLN TLLQQMEDTK ITTAEKSSVQ 120
  121 SSLNTKENTP QQPKKSRNRQ KERLERRKAE MKKMSEQAEL ESEKMADLKN EEKKKFSKIL 180
  181 EEAGLVAVDI PADGNCLFAS ISHQLNYHHN VKLNSQALRN KSADYVLKHC EQFEGFLLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	1qvrA
Description:	Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [240-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EESGEVLPVS DYCNEIRNNS KWGSDIEIQA LANSLEVPVH VYNTEGPVLK FNPSTVKFEK  60
   61 PLCIAYYQHL FGLGAHYNSL LYRDN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.68
Match:	1tffA
Description:	Structure of Otubain-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits