YRC Public Data Repository - Protein Structure Prediction

Protein:	YEOB_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	636 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEOB_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|44985138 - gi\|44985138\|gb\|AAS53916.1\| AFR545Wp [Ashbya gossypii ATCC 10895] gi\|44985138, gi\|... - gi\|45199063\|ref\|NP_986092.1\| AFR545Wp [Ashbya gossypii ATCC 10895], gi\|44985138\|gb\|AAS53916.1\| AFR54...	564.0	[0..7]	[636..3]
KRE6_YEAST - Beta-glucan synthesis-associated protein KRE6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... gi\|151942930 - gi\|151942930\|gb\|EDN61276.1\| killer toxin resistant protein [Saccharomyces cerevisiae YJM789] KRE6 - Protein required for beta-1,6 glucan biosynthesis; putative beta-glucan synthase; appears functional... gi\|207340234 - gi\|207340234\|gb\|EDZ68649.1\| YPR159Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408082 - gi\|190408082\|gb\|EDV11347.1\| beta-glucan synthase [Saccharomyces cerevisiae RM11-1a]	544.0	[0..7]	[636..59]
gi\|238880979 - gi\|238880979\|gb\|EEQ44617.1\| beta-glucan synthesis-associated protein KRE6 [Candida albicans WO-1] SKN1_CANAX - Beta-glucan synthesis-associated protein SKN1 OS=Candida albicans GN=SKN1 PE=2 SV=1	534.0	[0..9]	[634..103]
YEPB_SCHPO - Uncharacterized beta-glucan synthesis-associated protein C23H3.11c OS=Schizosaccharomyces pombe (str... SPAC23H3.11c - glucosidase	524.0	[0..34]	[636..4]
gi\|68478671, gi\|... - gi\|68478671\|ref\|XP_716604.1\| likely beta-1,6-glucan synthase [Candida albicans SC5314], gi\|46438276\|... orf19.7363 - KRE6 CGDID:CAL0004712 Assembly 19, Contig19-2513 (37708, 39930) CDS, translated using codon table 12...	520.0	[0..7]	[634..116]
gi\|49526993 - gi\|49526993\|emb\|CAG60620.1\| unnamed protein product [Candida glabrata] gi\|50290503, gi\|... - gi\|50290503\|ref\|XP_447683.1\| hypothetical protein CAGL0I10054g [Candida glabrata CBS138], gi\|4952699...	508.0	[0..12]	[636..87]
gi\|34484272 - gi\|34484272\|gb\|AAQ72769.1\| beta-1,6-glucan synthetase [Pneumocystis carinii]	499.0	[0..70]	[636..114]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNVRGDLNR KTPSDGNVNE IGSMYASRDT STSSFTNPTD SSTRLLYNNA SNATFSSAAL  60
   61 AAGVGGTRAS GYTHRFSIRP SSQTYNRYPN GGNSAGSDMY STSPQNNSIV DDIENINKLE 120
  121 AVAFAGPTAG ESDFSLSRED KEIDDFLHYP LPAKDAKKLS YFVGGEGLMQ LLFLLFLAAG 180
  181 TGMLFIGLPI LTYTGHNSLA STRVTGITNH QFRILRLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [219-636]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYGSLIDPDT PESAYTFDSQ DLGTLDLVFS DEFNYPGRAF YDGDDQFWLA TDLHYAATTD  60
   61 YEYYDADTPT TANGTLRLRM DAFYNHDLNF RSGMVTTWNK LCFKGGRIEV SASLGGSPYI 120
  121 PGFWPGIWTI GNLVRPGYLA TSDGVWPYSY NSCDAGITPN QSDPSGISYL GGQRLNQCVC 180
  181 KGEDHPNVGT GRGGPEIDAL EGTFGSGIPY NGSIYLETMP VVSQSAQYAP FDLYMYPNYD 240
  241 FVTIYNQSVS AMNGWAGGVY QQALSCASQL NNSWLSGNAY QKYGFDYKPG SGPDALISWF 300
  301 VGDEYTWTMR QPAVGQNGNI ASRPVSEEPM IVVLNFGISP TWIYFYWYEL TFPQTMYVDY 360
  361 VRIYQDSSDS SSVLGCDPEG FPTTEYIANH PKAYLNYNAT SWSEAGYVRP KNSLMDGC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	2hykA
Description:	No description for 2hykA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits