| Protein: | NU132_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 1162 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NU132_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
1087.0 | [0..17] | [1160..85] |
|
|
1077.0 | [0..18] | [1159..79] |
|
|
1072.0 | [0..17] | [1160..85] |
|
|
1023.0 | [0..33] | [1158..108] |
|
|
913.0 | [0..5] | [1101..39] |
|
|
911.0 | [0..5] | [1101..38] |
|
|
909.0 | [0..5] | [1101..38] |
|
Region A: Residues: [1-455] |
1 11 21 31 41 51
| | | | | |
1 MSSILGKRKN EEVVSFSPLK RISVEKSLLD STAYNNSLDW LRSKNFKVSC LLKHFNSKII 60
61 NDHPLSGSCY TDIGYALINS RKACFILSYR QSLGTAEPPT ITFPLPEEDS NGFSGQNALT 120
121 AFVPSDASDK EPGLLIVMPI SGRIAYWTSI GNALAQSYIC PQGMESLIKL LPKEKCEHLC 180
181 CSNPMKFIIS TNFGRLFSVQ LRDPAGQPDV SVQLFASDIS TFSTILQKMK IFNYPSIHII 240
241 ALKSPPLFSP YQHLLYVAEA SGLLEIYDLK LENKLVSGMN LSPIFKQVLR EGCPDASGLE 300
301 VLDLTICPTN GNLVSFLVCW KNSINYRYMI ISLDFSDISS PSVMNIHPLY SFSSKSLESS 360
361 KLHYSSSGNS LFVVLTDAVI IVHVQEDDKD IVSRTSWEEV IRMNTNVSGG IFMSTCYKYV 420
421 LGKYSIPTES CFIATPYSGI AEIEVHSLEH PANNE
|
| Detection Method: |  |
| Confidence: | 97.0 |
| Match: | 1xksA |
| Description: | The crystal structure of the N-terminal domain of Nup133 reveals a beta-propeller fold common to several nucleoporins |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleocytoplasmic transporter activity | 7.36869426424539 | bayes_pls_golite062009 |
| transporter activity | 2.55928656852707 | bayes_pls_golite062009 |
| binding | 2.00508289492248 | bayes_pls_golite062009 |
| protein binding | 0.548945337973353 | bayes_pls_golite062009 |
|
Region A: Residues: [456-555] |
1 11 21 31 41 51
| | | | | |
1 SLVKSKLEEA VFYSFLPGNP IDFSCNYLRS IKKPELERII VDLGMDILNS RSTHLPPLFA 60
61 SLMQHLSCRL NSLNNLVRYI RSMSLDVDRQ VLYKLRVMGE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.642 | 0.281 | poly(A)+ mRNA export from nucleus | a.25.1 | Ferritin-like |
| View | Download | 0.617 | 0.062 | poly(A)+ mRNA export from nucleus | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.724 | 0.045 | poly(A)+ mRNA export from nucleus | a.29.2 | Bromodomain |
| View | Download | 0.599 | 0.007 | poly(A)+ mRNA export from nucleus | a.48.2 | Transferrin receptor ectodomain, C-terminal domain |
| View | Download | 0.618 | N/A | N/A | a.25.1 | Ferritin-like |
|
Region A: Residues: [556-622] |
1 11 21 31 41 51
| | | | | |
1 KCNSVRYLWN TIDTEFSTVS HSLIFQRIIY RLTQSASSDN ALREWFLHNI ESIDQLIAQA 60
61 HEFCIDS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [623-825] |
1 11 21 31 41 51
| | | | | |
1 GSRVQELPLE VLDVIMEANE VILAIQSSAL AYRRESQKIY KLSIDTFGEE VPWTSTPETL 60
61 VLLCRQFELT RSALVQSHQG TSDVENTFKI KDKGVLRNVV SNLEVQLVAL TEVCFDAYSE 120
121 RIRWIEQRCG KDASEIQDVK EAFAVNRRFW VQTLSDIGKG SSAIRIAEKY SDYRSLVELC 180
181 YQLYEDNELT DALNNYLDLF GIK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [826-1003] |
1 11 21 31 41 51
| | | | | |
1 FAFILYDYFV ENGMALELLN SDRFNKSYLK QFFKSRDYNQ ISWMHDMRLG DYDAASHRLL 60
61 QLATKQEKLV DKKESELSLS KLFLYAVPSN SGNIRDLVLV EQKLEQLHIQ KMVSKSVMPV 120
121 VERLRSQGKK YQLVEAVVDD LIGAKVAPVI ARQVMQRVVK KFIAGQVVEA TELLEYLS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1004-1162] |
1 11 21 31 41 51
| | | | | |
1 FSLYRREDLV EGEVTDYYLA LRLLLTTRLT DDAKRFYENT IWRRAVLHDN WIQVLDTQGK 60
61 NDAIIETQFR MSALYRTLEA VTINGLFHEG LIRPGSLSSC KFEGYDPQNL ISIYPPARFG 120
121 DVTEVTKVLN RESVKLDHYL TKTNLNTCYI SMCLSCDTI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.467 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.535 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.458 | a.77.1 | DEATH domain |
| View | Download | 0.387 | d.55.1 | Ribosomal protein L22 |
| View | Download | 0.426 | a.4.5 | "Winged helix" DNA-binding domain |
