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View Structure Prediction Details

Protein: LCB4_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 458 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCB4_SCHPO.

Description E-value Query
Range
Subject
Range
gi|42544498, gi|... - gi|46111787|ref|XP_382951.1| hypothetical protein FG02775.1 [Gibberella zeae PH-1], gi|42544498|gb|E...
306.0 [0..8] [454..15]
gi|40747138, gi|... - gi|67518017|ref|XP_658780.1| hypothetical protein AN1176.2 [Aspergillus nidulans FGSC A4], ref|XP_40...
303.0 [0..7] [449..30]
gi|198442891, gi... - gi|34867563|ref|XP_217019.2| PREDICTED: similar to Ceramide kinase (Acylsphingosine kinase) (mCERK) ...
290.0 [0..26] [449..41]
gi|109451616, gi... - gi|208967689|dbj|BAG72490.1| ceramide kinase [synthetic construct], gi|109451616|emb|CAK54679.1| CER...
CERK - ceramide kinase
288.0 [0..33] [449..48]
gi|114686947 - gi|114686947|ref|XP_001137835.1| PREDICTED: ceramide kinase isoform 1 [Pan troglodytes]
288.0 [0..33] [449..48]
gi|109094558 - gi|109094558|ref|XP_001111087.1| PREDICTED: similar to ceramide kinase isoform a [Macaca mulatta]
285.0 [0..33] [449..48]
CERK1_MOUSE, CEK... - Ceramide kinase OS=Mus musculus GN=Cerk PE=2 SV=1, (Q8K4Q7) Ceramide kinase (EC 2.7.1.138) (Acylsphi...
283.0 [0..26] [449..41]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFGLTNNSI KAFEDQKLLH IHQSCVSYPS DTLICSIPVS AKNVDLNIPF KNILWVDKTG  60
   61 PNSVTLSYVS RSSKVATKCW VDFVENSDQF CEYLLDVAYK GIKR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-458]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRRFIVFINP HGGKGKAKHI WESEAEPVFS SAHSICEVVL TRRKDHAKSI AKNLDVGSYD  60
   61 GILSVGGDGL FHEVINGLGE RDDYLEAFKL PVCMIPGGSG NAFSYNATGQ LKPALTALEI 120
  121 LKGRPTSFDL MTFEQKGKKA YSFLTANYGI IADCDIGTEN WRFMGENRAY LGFFLRLFQK 180
  181 PDWKCSIEMD VVSSDRTEIK HMYEKSKNLA PMSESSDSDK TVSTSPESHL LTFEINDLSI 240
  241 FCAGLLPYIA PDAKMFPAAS NDDGLIDVVI VYSKQFRKSL LSMFTQLDNG GFYYSKHLNY 300
  301 YKVRSFRFTP VNTGKRHYFA LDGESYPLEP FECRVAPKLG TTLSPVAGFQ LLDI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.522879
Match: 2bonA
Description: No description for 2bonA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle