YRC Public Data Repository - Protein Structure Prediction

Protein:	YH6B_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	507 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YH6B_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|46443699, gi\|... - gi\|68468411\|ref\|XP_721765.1\| hypothetical protein CaO19.1690 [Candida albicans SC5314], gi\|46443699\|... orf19.1690 - TOS1 CGDID:CAL0000187 Assembly 19, Contig19-10123 (187827, 189233) CDS, translated using codon table...	515.0	[0..24]	[505..22]
gi\|44982713 - gi\|44982713\|gb\|AAS51976.1\| ADR056Wp [Ashbya gossypii ATCC 10895] gi\|45187929, gi\|... - gi\|45187929\|ref\|NP_984152.1\| ADR056Wp [Ashbya gossypii ATCC 10895], gi\|44982713\|gb\|AAS51976.1\| ADR05...	507.0	[0..25]	[505..21]
TOS1_YEAST - Protein TOS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOS1 PE=1 SV=1 TOS1 - Covalently-bound cell wall protein of unknown function; identified as a cell cycle regulated SBF tar...	495.0	[0..18]	[505..19]
gi\|49528903, gi\|... - gi\|50294356\|ref\|XP_449589.1\| hypothetical protein CAGL0M05599g [Candida glabrata CBS138], gi\|4952890... gi\|49528903 - gi\|49528903\|emb\|CAG62565.1\| unnamed protein product [Candida glabrata]	444.0	[0..18]	[505..13]
gi\|28926847, gi\|... - gi\|32414611\|ref\|XP_327785.1\| hypothetical protein [Neurospora crassa], gi\|28926847\|gb\|EAA35810.1\| hy... gi\|85116387 - gi\|85116387\|ref\|XP_965046.1\| hypothetical protein [Neurospora crassa OR74A]	428.0	[0..148]	[499..25]
gi\|50545287, gi\|... - gi\|50545287\|ref\|XP_500181.1\| hypothetical protein [Yarrowia lipolytica], gi\|49646046\|emb\|CAG84113.1\|...	422.0	[0..12]	[507..25]
gi\|49641094, gi\|... - gi\|50304025\|ref\|XP_451962.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641094\|emb\|CAH0235... gi\|49641094 - gi\|49641094\|emb\|CAH02355.1\| KLLA0B09746p [Kluyveromyces lactis]	421.0	[0..24]	[505..19]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAKSFIASF LFLCFAFSGV KADGCSEENG YYYCNQASEV EFTNVGYSST YNEITNMDTS  60
   61 SCSCSSTPKS YGGNLAPFDE EFSFHFRGPI ELKRFAVYYP DTSNALSSLR KRSNNQHMKR 120
  121 HPHHKRDDVI DSTLTVYETV MYTTAV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [147-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGDSATTPAA SEAQASSDIL SSLASLSSAS TDNLAASVTP TTVAASVASS VDTDSASAT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [206-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISSVVDSATS SVSTVIPSSI ISAAPPDSAS ESTPASTSYA SSTTSATSTS TTSGSSGSSD  60
   61 WGRSSFYEAD SGTSDNIVFL NNMGGSAGSG VWSSCFGNSL SFAASNGVDG ASSSQVLENI 120
  121 LVASDKEFSI WTATECNND

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [345-507]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CGYYLPGIPA YHGFSGAKLV LMEFIMPHDS SSSYNQDMPA IWSLNAQIPR TLQYGNADCS  60
   61 CWTTGCGEFD IFEVLSTGNE KMIPTLHGSQ GSSNGNGGGA GSSDYFARPT SSSMIGAVIY 120
  121 DTSSSGIYII DVTDQNVSFD STYSASDVDA WLQSGATIVQ LSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits