YRC Public Data Repository - Protein Structure Prediction

Protein:	LAF1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LAF1_SCHPO.

Description	E-value	Query Range	Subject Range
LAF2_SCHPO - SWIRM domain-containing protein laf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=laf2 ... SPCC1682.13 - SWIRM domain protein	193.0	[0..40]	[297..11]
gi\|207340855 - gi\|207340855\|gb\|EDZ69077.1\| YOR338Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407633 - gi\|190407633\|gb\|EDV10900.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YO338_YEAST - SWIRM domain-containing protein YOR338W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... YOR338W - Putative protein of unknown function; YOR338W transcription is regulated by Azf1p and its transcript...	175.0	[0..41]	[297..72]
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	173.0	[0..7]	[200..1484]
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	171.0	[0..6]	[226..1672]
gi\|32417148, gi\|... - gi\|38636425\|emb\|CAE81961.1\| conserved hypothetical protein [Neurospora crassa], gi\|32417148\|ref\|XP_3... gi\|85118725 - gi\|85118725\|ref\|XP_965493.1\| hypothetical protein [Neurospora crassa OR74A]	158.0	[0..12]	[296..97]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	155.0	[0..2]	[194..1512]
gi\|111060144 - gi\|111060144\|gb\|EAT81264.1\| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]	150.0	[0..13]	[205..1065]
gi\|49644323, gi\|... - gi\|50310335\|ref\|XP_455187.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644323\|emb\|CAG9789... gi\|49644323\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	147.0	[0..118]	[297..253]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSQTLVYS IPRNVEKDTC AAAIKAYQYL ISPPPSPIPN DKVASTVDVP KCSTIPESPK  60
   61 DSIVEPKPTA TPVAQLHSKV YDLYRDSPKI WLRRERQWLQ RHSPAYRFST PAAKRPRRQP 120
  121 SSFLDVHASN TRKRGSPDTP DSGHSTPHSK GDVHPGMPQH NTRFKQSSRE FSSNTQAIDV 180
  181 ANTPYELLPD YSPDMSVLDK RSH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [204-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRPLRSEWKG PPLDLSNDEN RHLLHPAELQ LAATLRLPCL VYLDNKRRIF AEWHNRRTQG  60
   61 LSFRKTDAQR ASRVDVNKAS RLWKAFHDEG FFDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	2eljA
Description:	No description for 2eljA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits