YRC Public Data Repository - Protein Structure Prediction

Protein:	YDBI_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	336 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDBI_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|46127499, gi\|... - gi\|46127499\|ref\|XP_388303.1\| hypothetical protein FG08127.1 [Gibberella zeae PH-1], gi\|42549083\|gb\|E...	337.0	[0..1]	[336..1]
YL287_YEAST - Uncharacterized protein YLR287C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR287C ... YLR287C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...	330.0	[0..8]	[332..7]
gi\|28922060, gi\|... - gi\|32409959\|ref\|XP_325460.1\| predicted protein [Neurospora crassa], gi\|28922060\|gb\|EAA31331.1\| conse... gi\|85098053 - gi\|85098053\|ref\|XP_960567.1\| hypothetical protein NCU05605 [Neurospora crassa OR74A]	325.0	[0..10]	[336..16]
gi\|39941380, gi\|... - gi\|39941380\|ref\|XP_360227.1\| hypothetical protein MG05601.4 [Magnaporthe grisea 70-15], gb\|EAA54810....	314.0	[0..7]	[330..9]
gi\|44986316, gi\|... - gi\|45201382\|ref\|NP_986952.1\| AGR286Cp [Ashbya gossypii ATCC 10895], gi\|44986316\|gb\|AAS54776.1\| AGR28... gi\|44986316 - gi\|44986316\|gb\|AAS54776.1\| AGR286Cp [Ashbya gossypii ATCC 10895]	290.0	[0..3]	[336..18]
gi\|46432589, gi\|... - gi\|68489731\|ref\|XP_711298.1\| hypothetical protein CaO19.6597 [Candida albicans SC5314], gi\|46432589\|... orf19.6597 - orf19.6597 CGDID:CAL0003340 Assembly 19, Contig19-2449 (16725, 15550) CDS, reverse complemented, tra...	288.0	[0..1]	[330..1]
gi\|40742462, gi\|... - gi\|67541685\|ref\|XP_664610.1\| hypothetical protein AN7006.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	278.0	[0..12]	[335..5]
gi\|116201677, gi... - gi\|88177241\|gb\|EAQ84709.1\| hypothetical protein CHGG_08723 [Chaetomium globosum CBS 148.51], gi\|1162...	246.0	[0..47]	[329..56]
gi\|169784187 - gi\|169784187\|ref\|XP_001826555.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83775300 - gi\|83775300\|dbj\|BAE65422.1\| unnamed protein product [Aspergillus oryzae]	163.0	[0..24]	[335..17]
gi\|159122136 - gi\|159122136\|gb\|EDP47258.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|70982201, gi\|... - gi\|70982201\|ref\|XP_746629.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668442...	155.0	[0..34]	[335..28]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTMVKNQA EEDEIVKSLN NVLKIVVTAR KCLDDMKPIE LPSELVESPL SMLKDVATLI  60
   61 HQYTTKLSVA AKPPITRDAL EKYANDMATT ITPLIAAVQV FNAEKYGEII QNRLKMYAER 120
  121 VLFGIEALLR SVSPKPLGYI SE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [143-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DWKTRGRLID TGILWESCEK IEKLGSEGIV GYMLEEWDNF VSMLEDARSD LEDYKEGDDS  60
   61 NWDDFGSESE DDSKEAHSEE VFRSEEQIQL ANSLLQKLNA CKILFLSIKK RRIKNEYPNT 120
  121 FLGELFNAAK QTSDSIDDIV AQIQEDDENF ENELDNFHRS ARNLCKICIS SAQEDSFTPW 180
  181 FSKWLENWEI VSQK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.607	0.346	cytosol	a.118.8	TPR-like
View	Download	0.529	0.343	translation	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.673	0.001	molecular_function	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.533	N/A	N/A	a.118.8	TPR-like
View	Download	0.481	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits