YRC Public Data Repository - Protein Structure Prediction

Protein:	SMI1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	504 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMI1_SCHPO.

Description	E-value	Query Range	Subject Range
GS1_NEUCR - Glucan synthesis regulatory protein OS=Neurospora crassa GN=gs-1 PE=2 SV=1 GS1_NEUCR - Glucan synthesis regulatory protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.7...	455.0	[0..9]	[485..1]
gi\|145014687, gi... - gi\|39943918\|ref\|XP_361496.1\| hypothetical protein MGG_03970 [Magnaporthe grisea 70-15], gb\|EAA50211....	448.0	[0..7]	[496..3]
gi\|32405832, gi\|... - gi\|32405832\|ref\|XP_323529.1\| GLUCAN SYNTHASE-1 (1,3-BETA-GLUCAN SYNTHASE) (UDP-GLUCOSE-1,3-BETA-D-GL... gi\|85101437 - gi\|85101437\|ref\|XP_961149.1\| GLUCAN SYNTHASE-1 (1,3-BETA-GLUCAN SYNTHASE) (UDP-GLUCOSE-1,3-BETA-D-GL...	434.0	[0..20]	[485..1]
gi\|67903718, gi\|... - gi\|67903718\|ref\|XP_682115.1\| hypothetical protein AN8846.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	429.0	[0..9]	[479..5]
gi\|115438480, gi... - gi\|115438480\|ref\|XP_001218077.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	385.0	[0..9]	[476..5]
gi\|169765265 - gi\|169765265\|ref\|XP_001817104.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83764958 - gi\|83764958\|dbj\|BAE55102.1\| unnamed protein product [Aspergillus oryzae]	385.0	[0..11]	[480..7]
SMI1 - Protein involved in the regulation of cell wall synthesis; proposed to be involved in coordinating c... SMI1_YEAST - Cell wall assembly regulator SMI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMI1 P...	373.0	[0..54]	[504..21]
gi\|159126212 - gi\|159126212\|gb\|EDP51328.1\| 1,3-beta-glucan biosynthesis protein, putative [Aspergillus fumigatus A1... gi\|70998666, gi\|... - gi\|70998666\|ref\|XP_754055.1\| 1,3-beta-glucan biosynthesis protein [Aspergillus fumigatus Af293], gi\|...	373.0	[0..20]	[491..1]
gi\|68476607, gi\|... - gi\|68476607\|ref\|XP_717596.1\| hypothetical protein CaO19.5058 [Candida albicans SC5314], gi\|46439313\|... orf19.5058 - SMI1 CGDID:CAL0001688 Assembly 19, Contig19-10218 (15477, 13615) CDS, reverse complemented, translat...	370.0	[0..8]	[495..2]
gi\|119182439, gi... - gi\|90301136\|gb\|EAS30767.1\| hypothetical protein CIMG_06246 [Coccidioides immitis RS], gi\|119182439\|r...	347.0	[0..20]	[488..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNSFSSMA NSVTSFFQSL TTPNRHADPS FRPSRREKQS RLPTPLQSVA ASAYSGVNAS  60
   61 QTGLLNDSRA NSVTNLPNSS NTSQVGLNNI SPAPVGYVPG SKTNELANNS MEMQEIS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.282	0.868	cellular cell wall organization	a.2.7	tRNA-binding arm

Predicted Domain #2

Region A:
Residues: [118-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNGSASLPPP VSESWRRIDR WAEENYYELY CQLCYGATVA DVDSLEYELE CTLPRDVRES  60
   61 LYIHDGQDRG GQPTGILFGV TLLDIEEIEE ESELWRRVAQ SYAEATLAGK IDQAVASRQA 120
  121 SFPPGAVQCV YAHPGWIPLA KDFVGNNIAI DLAPGPAGQW GQVILFGRDQ DTKYVVARSW 180
  181 ADFLAIVAYD MENGKWLVDE DD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.73
Match:	2prvA
Description:	No description for 2prvA was found.

Predicted Domain #3

Region A:
Residues: [320-504]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSLRLIYGPP REQWSYLDIL KYRARKAERR KFKKRDGKRT TRPIPKSIAK EDVTNSANST  60
   61 APSTGTTVLD DGLDNNYEDI PLYGPSKDEE LIKKEELEAD TDLGLINTSE INQPANLPDE 120
  121 PTAETSNPVS ATTVEAVTTT ADNKDEEKND HVTEDVSQNS TIAEASSLQA QEEEKEIETT 180
  181 SVKQE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits