YRC Public Data Repository - Protein Structure Prediction

Protein:	LEM2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	688 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEM2_SCHPO.

Description	E-value	Query Range	Subject Range
SRC1_YEAST - Inner nuclear membrane protein SRC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRC1... SRC1 - Inner nuclear membrane protein that functions in regulation of subtelomeric genes and is linked to T...	429.0	[0..16]	[678..137]
gi\|39944762, gi\|... - gi\|39944762\|ref\|XP_361918.1\| hypothetical protein MG04363.4 [Magnaporthe grisea 70-15], gb\|EAA50604....	429.0	[0..3]	[668..7]
gi\|46105492, gi\|... - gi\|46105492\|ref\|XP_380550.1\| hypothetical protein FG00374.1 [Gibberella zeae PH-1], gi\|42546791\|gb\|E...	391.0	[0..1]	[669..4]
gi\|85111619 - gi\|85111619\|ref\|XP_964023.1\| hypothetical protein NCU09319 [Neurospora crassa OR74A] gi\|32423147, gi\|... - gi\|32423147\|ref\|XP_332011.1\| hypothetical protein [Neurospora crassa], gi\|28925782\|gb\|EAA34787.1\| pr...	388.0	[0..3]	[668..8]
gi\|46096360, gi\|... - gi\|71003349\|ref\|XP_756355.1\| hypothetical protein UM00208.1 [Ustilago maydis 521], ref\|XP_397823.1\| ...	377.0	[0..2]	[667..5]
gi\|40740029, gi\|... - gi\|67526905\|ref\|XP_661514.1\| hypothetical protein AN3910.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	367.0	[0..3]	[667..6]
gi\|45190906, gi\|... - gi\|45190906\|ref\|NP_985160.1\| AER303Wp [Ashbya gossypii ATCC 10895], gi\|44983948\|gb\|AAS52984.1\| AER30... gi\|44983948 - gi\|44983948\|gb\|AAS52984.1\| AER303Wp [Ashbya gossypii ATCC 10895]	358.0	[0..8]	[670..253]
mug61 - Sad1 interacting factor MUG61_SCHPO - Meiotically up-regulated gene 61 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=m...	351.0	[0..16]	[667..84]
gi\|114191859, gi... - gi\|115398774\|ref\|XP_001214976.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	345.0	[0..3]	[667..6]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNWEDPNFE LRNLRVIDLK KILHESGVSF PVNARKIEYI RMVDRIRKNK LSSGPQHLLS  60
   61 HLQKEENSNT SKASSSEDEI APKYLYPSSP SKSTKKPHNE TEPLLSPQFI DKPSNIETPV 120
  121 KIESPHVSQN NTFQSYSELS PNVETSLTMK TPPAHASTPK FRSHKSHRVA VPM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [174-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFMDSSALHT SPAFSERLKL LSSSNNFSPQ LRSPKISHRL QTSATSSPLQ HKRPFTNVPE  60
   61 RVSRDIEFAP LDSARPSESS SPYSEVDSAE EDDELFQNYV LQQTRKESKL WSFIKKVFHD 120
  121 IKYANYRLLH NLRAFPGISA I

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [315-527]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSYLVHIFM ILLGVVAAIF LALLREKMFT AGFCDSGASG SSASILGISF PSLCRTCPPN  60
   61 AICPSPNYVE CKPGYVLYEP WYSSLGFWPS KYCVSDTSRE ESVNIFREEC LSVLRSWNAI 120
  121 LHCSNNSSDL LERNMSYNAH PYVADNLNIS SDHISFPSKP FALGLLHDTL LERKSPTLGL 180
  181 EMFEDLFKAS LAVLSETNEV VMDSKLICYD SWA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [528-688]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIPLRCRLKQ QLIKFVWRNK VFLFGILALS GVIFKLINFF RTRSIVAKYL PSASRFCVES  60
   61 LKRQKANYQM SRSQEPVIPL IEMHDILFHG NGPLEQIHMT KATARTLWEA IVERVEQVGS 120
  121 VRTRESEVDG EWTRVWEWVG TNTLDFQTDR SFINTTSPLR E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	2ch0A
Description:	No description for 2ch0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits