YRC Public Data Repository - Protein Structure Prediction

Protein:	YA4A_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	460 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YA4A_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|2130421 - gi\|2130421\|pir\|\|S58104 hypothetical protein SPAC31A2.10 - fission yeast (Schizosaccharomyces pombe)	581.0	[0..1]	[460..1]
gi\|25465828 - gi\|25465828\|pir\|\|T51895 hypothetical protein B23I11.70 [imported] - Neurospora crassa	577.0	[0..1]	[457..1]
gi\|32407098, gi\|... - gi\|32407098\|ref\|XP_324146.1\| hypothetical protein [Neurospora crassa], gi\|28921906\|gb\|EAA31179.1\| hy... gi\|85097290 - gi\|85097290\|ref\|XP_960415.1\| hypothetical protein [Neurospora crassa OR74A]	548.0	[0..1]	[457..1]
gi\|42549789, gi\|... - gi\|46128453\|ref\|XP_388780.1\| hypothetical protein FG08604.1 [Gibberella zeae PH-1], gi\|42549789\|gb\|E...	530.0	[0..1]	[457..1]
gi\|39974811, gi\|... - gi\|39974811\|ref\|XP_368796.1\| hypothetical protein MG00448.4 [Magnaporthe grisea 70-15], gb\|EAA48790....	523.0	[0..20]	[457..2]
SPCC584.03c - RanGTP-binding protein YC93_SCHPO - RanBD1 domain-containing protein C584.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...	440.0	[0..1]	[457..1]
gi\|116202143, gi... - gi\|88177474\|gb\|EAQ84942.1\| hypothetical protein CHGG_08956 [Chaetomium globosum CBS 148.51], gi\|1162...	440.0	[0..1]	[457..1]
gi\|45190310, gi\|... - gi\|45190310\|ref\|NP_984564.1\| AEL296Wp [Ashbya gossypii ATCC 10895], gi\|44983206\|gb\|AAS52388.1\| AEL29... gi\|44983206 - gi\|44983206\|gb\|AAS52388.1\| AEL296Wp [Ashbya gossypii ATCC 10895]	438.0	[0..1]	[458..1]
gi\|49088882, gi\|... - gi\|67523249\|ref\|XP_659685.1\| hypothetical protein AN2081.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	420.0	[0..1]	[457..1]
YRB30 - RanGTP-binding protein, inhibits RanGAP1 (Rna1p)-mediated GTP hydrolysis of RanGTP (Gsp1p); shares s... YRB30_YEAST - Ran-specific GTPase-activating protein 30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... gi\|207345465 - gi\|207345465\|gb\|EDZ72282.1\| YGL164Cp-like protein [Saccharomyces cerevisiae AWRI1631]	412.0	[0..1]	[458..1]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQVLSKVTT TAATYATAYA VRTGLQLAGS LVAKRFSKYI QTSAPKSSQF NLELVKSRLE  60
   61 QKIQAITPAV DLIQLVAARG NSSLQNLVPL IIRLRDHIDD FLEFIDYEAS GSEKKSPEKA 120
  121 DEASEKIFRR CEVLLREIEE TIPLINLSLT TAGITLNTAL SNTISPSRLL QAQCFLELSD 180
  181 KRFEESHTEI QIGPKFTVVL YTSFSQPSKS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [211-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGPLDVRWQE TFAKSDLYIK RVVSASQKFS YVICIDEDLN DGRYHEETVG KPTSAPVFGK  60
   61 KLEISLQRMS LLCYTVSGRL LNISQAKSPV LALQLTSIKD VSA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [314-460]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDKAHQDNSE DLNNPFIKNN DKTKFHQNID WIALEKYFEV NALDISDSES EDLSDILSDS  60
   61 EFSIGNRNKN IGNNEYSAQI SSDPAEEEIA NAMHSLKLEP ETSIYLTNPG SLSLLEYLLR 120
  121 LCSLQELHQI SCLEMTDSQL AAMLNSN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits