YRC Public Data Repository - Protein Structure Prediction

Protein:	MEMO1_MOUSE
Organism:	Mus musculus
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MEMO1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114576869 - gi\|114576869\|ref\|XP_001164110.1\| PREDICTED: chromosome 2 open reading frame 4 isoform 3 [Pan troglod... MEMO1 - mediator of cell motility 1 gi\|123982438, gi... - gi\|123997099\|gb\|ABM86151.1\| chromosome 2 open reading frame 4 [synthetic construct], gi\|123982438\|gb... gi\|126303134 - gi\|126303134\|ref\|XP_001371460.1\| PREDICTED: similar to CGI-27 protein [Monodelphis domestica] MEMO1_MACFA - Protein MEMO1 OS=Macaca fascicularis GN=MEMO1 PE=2 SV=1	446.0	[0..1]	[297..1]
MEMO1_RAT - Protein MEMO1 OS=Rattus norvegicus GN=Memo1 PE=1 SV=1	445.0	[0..1]	[297..1]
MEMO1_XENLA - Protein MEMO1 OS=Xenopus laevis GN=memo1 PE=2 SV=1	443.0	[0..1]	[297..1]
gi\|50740689 - gi\|50740689\|ref\|XP_419531.1\| PREDICTED: similar to CGI-27 protein [Gallus gallus]	443.0	[0..1]	[297..1]
MEMO1_XENTR - Protein MEMO1 OS=Xenopus tropicalis GN=memo1 PE=2 SV=1	443.0	[0..1]	[297..1]
gi\|74198004 - gi\|74198004\|dbj\|BAE35184.1\| unnamed protein product [Mus musculus]	439.0	[0..1]	[297..1]
MEMO1_DANRE - Protein MEMO1 OS=Danio rerio GN=memo1 PE=2 SV=1	438.0	[0..1]	[297..1]
gi\|82802793 - gi\|82802793\|gb\|ABB92446.1\| rcC2orf4 [Gorilla gorilla]	429.0	[0..1]	[297..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRVVCREA SHAGSWYTAS GPQLNAQLEG WLSQVQSTKR PARAIIAPHA GYTYCGSCAA  60
   61 HAYKQVDPSV TRRIFILGPS HHVPLSRCAL SSVDIYRTP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.811	N/A	N/A	d.68.3	SirA-like

Predicted Domain #2

Region A:
Residues: [100-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYDLRIDQKI YGELWKTGMF ERMSLQTDED EHSIEMHLPY TAKAMESHKD EFTIIPVLVG  60
   61 ALSESKEQEF GKLFSKYLAD PSNLFVVSSD FCHWGQRFRY SYYDESQGEI YRSIEHLDKM 120
  121 GMSIIEQLDP VSFSNYLKKY HNTICGRHPI GVLLNAITEL QKNGMNMSFS FLNYAQSSQC 180
  181 RSWQDSSVSY AAGALTVH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.09691
Match:	2pw6A
Description:	No description for 2pw6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits