YRC Public Data Repository - Protein Structure Prediction

Protein:	MEMO1_MOUSE
Organism:	Mus musculus
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MEMO1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114576869 - gi\|114576869\|ref\|XP_001164110.1\| PREDICTED: chromosome 2 open reading frame 4 isoform 3 [Pan troglod... MEMO1 - mediator of cell motility 1 gi\|123982438, gi... - gi\|123997099\|gb\|ABM86151.1\| chromosome 2 open reading frame 4 [synthetic construct], gi\|123982438\|gb... gi\|126303134 - gi\|126303134\|ref\|XP_001371460.1\| PREDICTED: similar to CGI-27 protein [Monodelphis domestica] MEMO1_MACFA - Protein MEMO1 OS=Macaca fascicularis GN=MEMO1 PE=2 SV=1	446.0	[0..1]	[297..1]
MEMO1_RAT - Protein MEMO1 OS=Rattus norvegicus GN=Memo1 PE=1 SV=1	445.0	[0..1]	[297..1]
MEMO1_XENLA - Protein MEMO1 OS=Xenopus laevis GN=memo1 PE=2 SV=1	443.0	[0..1]	[297..1]
gi\|50740689 - gi\|50740689\|ref\|XP_419531.1\| PREDICTED: similar to CGI-27 protein [Gallus gallus]	443.0	[0..1]	[297..1]
MEMO1_XENTR - Protein MEMO1 OS=Xenopus tropicalis GN=memo1 PE=2 SV=1	443.0	[0..1]	[297..1]
gi\|74198004 - gi\|74198004\|dbj\|BAE35184.1\| unnamed protein product [Mus musculus]	439.0	[0..1]	[297..1]
MEMO1_DANRE - Protein MEMO1 OS=Danio rerio GN=memo1 PE=2 SV=1	438.0	[0..1]	[297..1]
gi\|82802793 - gi\|82802793\|gb\|ABB92446.1\| rcC2orf4 [Gorilla gorilla]	429.0	[0..1]	[297..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRVVCREA SHAGSWYTAS GPQLNAQLEG WLSQVQSTKR PARAIIAPHA GYTYCGSCAA  60
   61 HAYKQVDPSV TRRIFILGPS HHVPLSRCAL SSVDIYRTP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.811	N/A	N/A	d.68.3	SirA-like
View	Download	0.806	N/A	N/A	c.102.1	Cell-division inhibitor MinC, N-terminal domain
View	Download	0.800	N/A	N/A	c.102.1	Cell-division inhibitor MinC, N-terminal domain
View	Download	0.785	N/A	N/A	c.13.2	Anti-sigma factor antagonist SpoIIaa
View	Download	0.708	N/A	N/A	c.13.2	Anti-sigma factor antagonist SpoIIaa
View	Download	0.686	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.624	N/A	N/A	c.102.1	Cell-division inhibitor MinC, N-terminal domain
View	Download	0.585	N/A	N/A	c.102.1	Cell-division inhibitor MinC, N-terminal domain

Predicted Domain #2

Region A:
Residues: [100-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYDLRIDQKI YGELWKTGMF ERMSLQTDED EHSIEMHLPY TAKAMESHKD EFTIIPVLVG  60
   61 ALSESKEQEF GKLFSKYLAD PSNLFVVSSD FCHWGQRFRY SYYDESQGEI YRSIEHLDKM 120
  121 GMSIIEQLDP VSFSNYLKKY HNTICGRHPI GVLLNAITEL QKNGMNMSFS FLNYAQSSQC 180
  181 RSWQDSSVSY AAGALTVH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.09691
Match:	2pw6A
Description:	No description for 2pw6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits