YRC Public Data Repository - Protein Structure Prediction

Protein:	COX9_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	58 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX9_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|46136727, gi\|... - gi\|46136727\|ref\|XP_390055.1\| hypothetical protein FG09879.1 [Gibberella zeae PH-1], gi\|42547262\|gb\|E...	102.0	[0..1]	[58..1]
COX9 - Subunit VIIa of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membra... COX9_YEAST - Cytochrome c oxidase subunit 7A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX9 PE=...	96.0	[0..1]	[58..1]
COX9_ASHGO - Cytochrome c oxidase subunit 7A OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRR... COX9_ASHGO - Cytochrome c oxidase subunit 7A OS=Ashbya gossypii GN=COX9 PE=3 SV=3	95.0	[0..2]	[58..3]
gi\|32410381, gi\|... - gi\|32410381\|ref\|XP_325671.1\| predicted protein [Neurospora crassa], gi\|28921535\|gb\|EAA30840.1\| predi... gi\|85095386 - gi\|85095386\|ref\|XP_960076.1\| hypothetical protein NCU05816 [Neurospora crassa OR74A]	93.0	[0..2]	[57..5]
gi\|116201055, gi... - gi\|88176930\|gb\|EAQ84398.1\| predicted protein [Chaetomium globosum CBS 148.51], gi\|116201055\|ref\|XP_0...	86.0	[0..1]	[58..1]
COX9_CANGA - Cytochrome c oxidase subunit 7A OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 06... COX9_CANGA - Cytochrome c oxidase subunit 7A OS=Candida glabrata GN=COX9 PE=3 SV=3	85.0	[0..2]	[58..3]
COX9_KLULA - Cytochrome c oxidase subunit 7A OS=Kluyveromyces lactis GN=COX9 PE=3 SV=3 COX9_KLULA - Cytochrome c oxidase subunit 7A OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / N...	82.0	[0..2]	[58..3]
gi\|240107476 - gi\|240107476\|gb\|EER25661.1\| cytochrome c oxidase subunit 7A precursor, putative [Coccidioides posada... gi\|90304990, gi\|... - gi\|90304990\|gb\|EAS34621.1\| predicted protein [Coccidioides immitis RS], gi\|119191195\|ref\|XP_00124620...	80.0	[0..1]	[58..1]
gi\|111059595 - gi\|111059595\|gb\|EAT80715.1\| predicted protein [Phaeosphaeria nodorum SN15]	77.0	[0..1]	[57..1]
gi\|70998921, gi\|... - gi\|70998921\|ref\|XP_754182.1\| cytochrome c oxidase family protein [Aspergillus fumigatus Af293], gi\|6... gi\|159127200 - gi\|159127200\|gb\|EDP52315.1\| cytochrome c oxidase family protein [Aspergillus fumigatus A1163]	77.0	[0..2]	[58..4]

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Predicted Domain #1

Region A:
Residues: [1-58]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGPVTGMF KRRIVTDFSV TMILGTLGAC YWWFGYHKPA ARQREEFYVK LAAEKNAE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.16
Match:	1occI
Description:	Mitochondrial cytochrome c oxidase subunit VIc
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	10.3150366419932	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	10.3150366419932	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	10.3150366419932	bayes_pls_golite062009
heme-copper terminal oxidase activity	10.024566013302	bayes_pls_golite062009
oxidoreductase activity	4.1533250902728	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	4.08304157761655	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	3.95300321159446	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.46518221207871	bayes_pls_golite062009
cation transmembrane transporter activity	3.34226454265581	bayes_pls_golite062009
ion transmembrane transporter activity	3.2049662588431	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.90358589415404	bayes_pls_golite062009
substrate-specific transporter activity	2.79253508387952	bayes_pls_golite062009
catalytic activity	0.370124335251591	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: