YRC Public Data Repository - Protein Structure Prediction

Protein:	YA27_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	607 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YA27_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|73947291 - gi\|73947291\|ref\|XP_541354.2\| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...	277.0	[0..120]	[524..2467]
gi\|109125970 - gi\|109125970\|ref\|XP_001115785.1\| PREDICTED: similar to zinc finger protein 665 [Macaca mulatta]	252.0	[0..83]	[534..278]
gi\|114626840 - gi\|114626840\|ref\|XP_528435.2\| PREDICTED: zinc finger protein 79 (pT7) [Pan troglodytes]	241.0	[0..53]	[494..273]
ZNF167 - zinc finger protein 167 gi\|187252543 - gi\|187252543\|gb\|AAI66704.1\| Zinc finger protein 167 [synthetic construct]	241.0	[0..91]	[498..347]
gi\|94386928 - gi\|94386928\|ref\|XP_982138.1\| PREDICTED: similar to zinc finger protein 560 [Mus musculus]	239.0	[0..24]	[498..354]
gi\|76620961 - gi\|76620961\|ref\|XP_589359.2\| PREDICTED: similar to zinc finger protein 354B [Bos taurus]	239.0	[0..116]	[494..319]

Back

Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAKPWNHTS EAFQASILED LKIIQKAGAE RNAKSSHGSI NSRSASPNKA TSRRNRAQNG  60
   61 NSNGRASVDN SDDGSKDDLD YSPSVKRKHV NGEGAEKGDH DTSNNGPSIT KLRRKVRRTY 120
  121 DTKDGFVAWN TLDDDFRPIV PDQERSRKIN PQKGNNNNLL KENKSLKTTA KDLSDISSSS 180
  181 MKKANNSSKP LFSG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [195-323]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLTFKANIPV PTSEVVTENN VTRNVTVYSN QKHLGNESEN FNDMEGRAED ISSNELLPTP  60
   61 EEYPYRYNND YCSACHGPGN FLCCETCPNS FHFTCIDPPI EEKNLPDDAW YCNECKHHSL 120
  121 YNELDEQEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	2jm1A
Description:	No description for 2jm1A was found.

Predicted Domain #3

Region A:
Residues: [324-499]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LESNVKEEGT MVDVWMQLCT YIDSHNPIQF HLPHSISSFF RGVGSGVMGE YIETDVLKHL  60
   61 KSSRRSNGEE RDPLLLKSKS GTPILCFRCH KSALVSQSIL ACDYCNSYWH PDCLNPPLAT 120
  121 LPSNLRKWKC PNHSDHVTPR YRLPEKAKVI RVGLPRGFKN KGNIVIDENE DEPSVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	2i13A
Description:	No description for 2i13A was found.

Predicted Domain #4

Region A:
Residues: [500-607]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIQLQGKIRV VPSKPFKLNF LEQIRDNVIN LRKMVEQDEQ LCIETFSKFD FYATRDCELP  60
   61 LRILCDVAND NLENDDYVLA LRDLLRISKW DPNQPVPAPF DLANLLSY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits