YRC Public Data Repository - Protein Structure Prediction

Protein:	OFD1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	515 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OFD1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|39945522, gi\|... - gi\|39945522\|ref\|XP_362298.1\| hypothetical protein MGG_04743 [Magnaporthe grisea 70-15], gb\|EAA50984....	557.0	[0..6]	[511..25]
gi\|85110987 - gi\|85110987\|ref\|XP_963722.1\| hypothetical protein NCU00520 [Neurospora crassa OR74A] gi\|32408437, gi\|... - gi\|32408437\|ref\|XP_324700.1\| hypothetical protein [Neurospora crassa], gi\|28925442\|gb\|EAA34486.1\| co...	557.0	[0..7]	[511..31]
gi\|46432753, gi\|... - gi\|68489465\|ref\|XP_711450.1\| possible Fe II, 2-oxoglutarate-dependent dioxygenase [Candida albicans ... orf19.1802 - orf19.1802 CGDID:CAL0001575 Assembly 19, Contig19-10126 (39274, 37421) CDS, reverse complemented, tr...	553.0	[0..6]	[511..26]
gi\|46107414, gi\|... - gi\|46107414\|ref\|XP_380766.1\| hypothetical protein FG00590.1 [Gibberella zeae PH-1], gi\|42546408\|gb\|E...	551.0	[0..7]	[510..24]
gi\|49109708, gi\|... - gi\|67901134\|ref\|XP_680823.1\| hypothetical protein AN7554.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	542.0	[0..7]	[509..27]
TPA1 - Poly(rA)-binding protein involved in translation termination efficiency, mRNA poly(A) tail length an... TPA1_YEAST - Prolyl 3,4-dihydroxylase TPA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPA1 PE=1 ...	537.0	[0..5]	[511..22]
gi\|44982520, gi\|... - gi\|45187759\|ref\|NP_983982.1\| ADL114Cp [Ashbya gossypii ATCC 10895], gi\|44982520\|gb\|AAS51806.1\| ADL11... gi\|44982520 - gi\|44982520\|gb\|AAS51806.1\| ADL114Cp [Ashbya gossypii ATCC 10895]	535.0	[0..5]	[511..19]
gi\|83770062 - gi\|83770062\|dbj\|BAE60197.1\| unnamed protein product [Aspergillus oryzae] gi\|169775463 - gi\|169775463\|ref\|XP_001822199.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238495891, gi... - gi\|238495891\|ref\|XP_002379181.1\| oxidoreductase, putative [Aspergillus flavus NRRL3357], gi\|22069406...	515.0	[0..7]	[509..27]
gi\|116192421, gi... - gi\|88181841\|gb\|EAQ89309.1\| hypothetical protein CHGG_05928 [Chaetomium globosum CBS 148.51], gi\|1161...	503.0	[0..7]	[511..26]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDTQQPTVL DRFAPHALDT SEAERLSREY HKNGPYNHVV IRPLINDTLL RNVRKELMEN  60
   61 IHFTEKVTDI YRVWQTGDLA NLDGLDKKEQ NMLKYLRQVR DALYSEEFRS HVQKITGCGP 120
  121 LSASKKDLSV NVYSKGCHLM NHDDVIGTRC ISYILYLVEP DEGWKPEYGG ALRLFPTLQP 180
  181 SFPAADFCHS IPPQWNQLSF FRVKPGHSFH DVEEVYVDKP RMAISGWFHY PQPGEPGYDA 240
  241 NYCDNTVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	2hbtA
Description:	No description for 2hbtA was found.

Predicted Domain #2

Region A:
Residues: [249-515]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLQSLTMKQM DLELPRFSYY PVVKPEPLSK QDTDILSNYI NPLYLTPDGI EKLSKRFFQD  60
   61 SVIVLVEFLN QEFANTLLKR IIDAERQPTP MHSSEVSFPW KTAIPPHKHR YLYLDHEEFG 120
  121 PDIILPMDLQ RLPAFQRWIQ LVSGLPLRSF HQVGRRFRPG SDFTLATTND TALLEATLCL 180
  181 SPGTGIANTD NGAYDIYMIG DEDPDVDAAV YRGDQQDDSI LLSLPAAWNV FSLVYRDEGV 240
  241 LQFVKYVSRQ AESSRWDIYS QWNPVAE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.41
Match:	2hbtA
Description:	No description for 2hbtA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits