YRC Public Data Repository - Protein Structure Prediction

Protein:	SF3B5_MOUSE
Organism:	Mus musculus
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SF3B5_MOUSE.

Description	E-value	Query Range	Subject Range
ENSCJAT00000043249 - null HGNC:21083\|Ensem... - factor 3b, subunit 5, 10kDa, factor 3b, subunit 5, 10kDa tr\|G1SVT3\|G1SVT3... - pep:novel chromosome:oryCun2:12:134817252:134817509:-1 gene:ENSOCUG00000008752 transcript:ENSOCUT000... tr\|M3VVN9\|M3VVN9... - Splicing factor 3b subunit 5 OS=Felis catus GN=SF3B5 PE=4 SV=1 CCDS5204.1_1 - null gi\|109072487 - gi\|109072487\|ref\|XP_001087950.1\| PREDICTED: similar to SF3b10 [Macaca mulatta] gi\|149744119 - gi\|149744119\|ref\|XP_001502492.1\| PREDICTED: similar to SF3b10 [Equus caballus] gi\|126310653, gi... - gi\|126310653\|ref\|XP_001370624.1\| PREDICTED: similar to Splicing factor 3b, subunit 5, 10kDa [Monodel... gi\|114609648, gi... - gi\|114609648\|ref\|XP_001172714.1\| PREDICTED: SF3b10 isoform 2 [Pan troglodytes], gi\|114609646\|ref\|XP_... gi\|73946096 - gi\|73946096\|ref\|XP_854535.1\| PREDICTED: similar to SF3b10 [Canis familiaris] gi\|60655303, gi\|... - gi\|60655303\|gb\|AAX32215.1\| splicing factor 3b subunit 5 [synthetic construct], gi\|117644966\|emb\|CAL3... SF3B5 - splicing factor 3b, subunit 5, 10kDa SF3B5_BOVIN - Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1	174.0	[0..1]	[86..1]
gi\|76780360 - gi\|76780360\|gb\|AAI06479.1\| MGC131202 protein [Xenopus laevis] gi\|62858321, gi\|... - gi\|62858321\|ref\|NP_001016441.1\| splicing factor 3b, subunit 5, 10kDa [Xenopus (Silurana) tropicalis]...	172.0	[0..1]	[86..1]
gi\|116117165, gi... - gi\|118792994\|ref\|XP_320622.3\| ENSANGP00000021330 [Anopheles gambiae str. PEST], gi\|116117165\|gb\|EAA0...	171.0	[0..1]	[85..5]
gi\|49904601, gi\|... - gi\|50540016\|ref\|NP_001002478.1\| splicing factor 3b, subunit 5 [Danio rerio], gi\|49904601\|gb\|AAH76334...	170.0	[0..1]	[85..1]
gi\|110755305 - gi\|110755305\|ref\|XP_001120310.1\| PREDICTED: similar to Probable splicing factor 3B subunit 5 (SF3b5)...	170.0	[0..1]	[85..1]
gi\|108877467, gi... - gi\|157114059\|ref\|XP_001657963.1\| hypothetical protein AaeL_AAEL006688 [Aedes aegypti], gi\|108877467\|...	170.0	[0..1]	[85..1]
gi\|115651356, gi... - gi\|115675803\|ref\|XP_001191266.1\| PREDICTED: similar to conserved hypothetical protein [Strongylocent...	169.0	[0..1]	[85..1]
gi\|220959976, gi... - gi\|220959976\|gb\|ACL92531.1\| CG11985-PA [synthetic construct], gi\|220951270\|gb\|ACL88178.1\| CG11985-PA... CG11985-PA - This gene is referred to in FlyBase by the symbol Dmel\CG11985 (CG11985, FBgn0040534). It is a prote... gi\|194903481, gi... - gi\|194903481\|ref\|XP_001980876.1\| GG17400 [Drosophila erecta], gi\|190652579\|gb\|EDV49834.1\| GG17400 [D... gi\|195330524, gi... - gi\|195330524\|ref\|XP_002031953.1\| GM26290 [Drosophila sechellia], gi\|194120896\|gb\|EDW42939.1\| GM26290... gi\|194182992, gi... - gi\|195499302\|ref\|XP_002096891.1\| GE24804 [Drosophila yakuba], gi\|194182992\|gb\|EDW96603.1\| GE24804 [D... gi\|195572393, gi... - gi\|195572393\|ref\|XP_002104180.1\| GD20826 [Drosophila simulans], gi\|194200107\|gb\|EDX13683.1\| GD20826 ...	169.0	[0..1]	[85..1]

Back

Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDRYTIHSQ LEHLQSKYIG TGHADTTKWE WLVNQHRDSY CSYMGHFDLL NYFAIAENES  60
   61 KARVRFNLME KMLQPSGPPA DKPEEN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.09691
Match:	PF07189.2
Description:	No description for PF07189.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.427	0.746	mRNA processing	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.352	0.066	spliceosomal complex	a.39.1	EF-hand
View	Download	0.393	0.004	spliceosomal complex	a.28.3	Retrovirus capsid protein C-terminal domain
View	Download	0.499	0.001	spliceosomal complex	a.150.1	Anti-sigma factor AsiA
View	Download	0.404	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits