| Protein: | gi|229904396, gi... |
| Organism: | Yersinia pestis Nepal516 |
| Length: | 643 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229904396, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..643] | [1..643] |
|
|
0.0 | [3..642] | [2..638] |
|
|
0.0 | [20..643] | [1..624] |
|
|
0.0 | [20..643] | [1..624] |
|
|
0.0 | [3..641] | [2..637] |
|
|
0.0 | [3..641] | [2..637] |
|
|
0.0 | [3..641] | [2..637] |
|
|
0.0 | [3..641] | [2..637] |
|
|
0.0 | [3..641] | [2..637] |
|
|
0.0 | [3..641] | [2..637] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MFSPDAKVRV QNFGRFLSNM VMPNIGAFIA WGIITALFIP TGWLPNETLA KLVGPMITYL 60
61 LPLLIGFTGG RLVGGDRGGV VGAITTMGVI VG
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [93-342] |
1 11 21 31 41 51
| | | | | |
1 ADMPMFLGAM IVGPLGGWAI KHFDRWVEGK IKSGFEMLVN NFSSGIIGML LALLAFMAIG 60
61 PLVEVLSKGL AYGVDVMVQN NLLPLASIFV EPAKILFLNN AINHGIFSPL GVQQAAETGK 120
121 SIFFLIEANP GPGLGVLMAY MFFGKGNAKQ SAGGAAIIHF FGGIHEIYFP YVLMNPRLLL 180
181 AVILGGMTGV FTLTLLNGGL VSAASPGSIL AILAMTPKGA YFANIAAVAT AFAVSFVVSA 240
241 ILLKSSKAKD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [343-500] |
1 11 21 31 41 51
| | | | | |
1 DEEGLEGATR RMQDMKAQSK GVQAANAAAA AGDLSTVRKI IVACDAGMGS SAMGAGVLRK 60
61 KVQDAGLKHI AVTNCAINNL PEDVDLVITH RDLTERAMRH APQAQHISLT NFLDSQLYNS 120
121 LTAELLQASQ LVDNTKVQKV IEKLDDSFEA FEDNLFKL
|
| Detection Method: | |
| Confidence: | 13.69897 |
| Match: | 1vkrA |
| Description: | STRUCTURE OF IIB DOMAIN OF THE MANNITOL-SPECIFIC PERMEASE ENZYME II |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [501-643] |
1 11 21 31 41 51
| | | | | |
1 GAENIFLNQH ATAKEQAIRF AGEQLVKGGY VEPEYVEAML DREKLSSTYL GESIAVPHGT 60
61 IEAKDRVLKT GVVFCQYPEG VRFGDEEDDV ARLVIGIAAR NNEHIQVITS LTNALDDDSV 120
121 IARLSKTTSV QEVLDLLGGK TSA
|
| Detection Method: | |
| Confidence: | 36.39794 |
| Match: | 1a3aA |
| Description: | Phosphotransferase IIa-mannitol |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein-N(PI)-phosphohistidine-sugar phosphotransferase activity | 4.89047341597444 | bayes_pls_golite062009 |
| carbohydrate transmembrane transporter activity | 3.92377913213665 | bayes_pls_golite062009 |
| transporter activity | 2.16741930408232 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.05879816720019 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.87457143976439 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.82451780056478 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.7251575499811 | bayes_pls_golite062009 |
| binding | 0.396676636991646 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.19707628828681 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.12881601139602 | bayes_pls_golite062009 |
| anion transmembrane transporter activity | 0.10209580008722 | bayes_pls_golite062009 |
