YRC Public Data Repository - Protein Structure Prediction

Protein:	UCN1_MOUSE
Organism:	Mus musculus
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UCN1_MOUSE.

Description	E-value	Query Range	Subject Range
UCN1_RAT - Urocortin OS=Rattus norvegicus GN=Ucn PE=1 SV=1	130.0	[0..1]	[122..1]
gi\|114576607, gi... - gi\|114576609\|ref\|XP_001156027.1\| PREDICTED: urocortin isoform 2 [Pan troglodytes], gi\|114576607\|ref\|...	118.0	[0..1]	[122..1]
CRF_XENLA - Corticoliberin OS=Xenopus laevis GN=crh PE=3 SV=1	115.0	[0..13]	[122..55]
UTS1_ONCMY - UI OS=Oncorhynchus mykiss PE=2 SV=1	113.0	[0..24]	[122..65]
gi\|7228331 - gi\|7228331\|emb\|CAB77056.1\| corticotropin-releasing hormone (CRH) [Oreochromis mossambicus]	110.0	[0..17]	[122..60]
gi\|76629937 - gi\|76629937\|ref\|XP_618452.2\| PREDICTED: urocortin [Bos taurus]	109.0	[0..1]	[122..166]
gi\|73980662 - gi\|73980662\|ref\|XP_853760.1\| PREDICTED: similar to Urocortin precursor [Canis familiaris]	106.0	[0..1]	[122..1]
gi\|42391836 - gi\|42391836\|dbj\|BAD08697.1\| corticotoropin releasing hormone precursor [Rana catesbeiana]	106.0	[0..13]	[122..40]
gi\|29691154 - gi\|29691154\|gb\|AAO89527.1\| corticotropin-releasing factor [Salvelinus alpinus]	105.0	[0..19]	[122..57]
gi\|46309232, gi\|... - gi\|49203293\|emb\|CAE00498.1\| corticotropin-releasing factor precursor [Platichthys flesus], gi\|463092...	105.0	[0..17]	[122..61]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQRGRATLL VALLLLAQLR PESSQWSPAA AAATGVQDPN LRWSPGVRNQ GGGVRALLLL  60
   61 LAERFPRRAG SEPAGERQRR DDPPLSIDLT FHLLRTLLEL ARTQSQRERA EQNRIIFDSV 120
  121 GK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits