YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: UCN1_MOUSE
Organism: Mus musculus
Length: 122 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UCN1_MOUSE.

Description E-value Query
Range
Subject
Range
UCN1_RAT - Urocortin OS=Rattus norvegicus GN=Ucn PE=1 SV=1
130.0 [0..1] [122..1]
gi|114576607, gi... - gi|114576609|ref|XP_001156027.1| PREDICTED: urocortin isoform 2 [Pan troglodytes], gi|114576607|ref|...
118.0 [0..1] [122..1]
CRF_XENLA - Corticoliberin OS=Xenopus laevis GN=crh PE=3 SV=1
115.0 [0..13] [122..55]
UTS1_ONCMY - UI OS=Oncorhynchus mykiss PE=2 SV=1
113.0 [0..24] [122..65]
gi|7228331 - gi|7228331|emb|CAB77056.1| corticotropin-releasing hormone (CRH) [Oreochromis mossambicus]
110.0 [0..17] [122..60]
gi|76629937 - gi|76629937|ref|XP_618452.2| PREDICTED: urocortin [Bos taurus]
109.0 [0..1] [122..166]
gi|73980662 - gi|73980662|ref|XP_853760.1| PREDICTED: similar to Urocortin precursor [Canis familiaris]
106.0 [0..1] [122..1]
gi|42391836 - gi|42391836|dbj|BAD08697.1| corticotoropin releasing hormone precursor [Rana catesbeiana]
106.0 [0..13] [122..40]
gi|29691154 - gi|29691154|gb|AAO89527.1| corticotropin-releasing factor [Salvelinus alpinus]
105.0 [0..19] [122..57]
gi|46309232, gi|... - gi|49203293|emb|CAE00498.1| corticotropin-releasing factor precursor [Platichthys flesus], gi|463092...
105.0 [0..17] [122..61]

Back

Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQRGRATLL VALLLLAQLR PESSQWSPAA AAATGVQDPN LRWSPGVRNQ GGGVRALLLL  60
   61 LAERFPRRAG SEPAGERQRR DDPPLSIDLT FHLLRTLLEL ARTQSQRERA EQNRIIFDSV 120
  121 GK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.619 d.58.19 Bacterial exopeptidase dimerisation domain
View Download 0.600 a.29.8 Description not found.
View Download 0.499 a.4.5 "Winged helix" DNA-binding domain
View Download 0.416 a.118.1 ARM repeat
View Download 0.412 d.58.16 Poly(A) polymerase, C-terminal domain
View Download 0.411 a.118.1 ARM repeat
View Download 0.375 c.23.12 Formate/glycerate dehydrogenase catalytic domain-like
View Download 0.344 d.58.16 Poly(A) polymerase, C-terminal domain
View Download 0.328 a.24.3 Cytochromes
View Download 0.263 a.24.3 Cytochromes


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle