YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|108780174, gi...
Organism:	Yersinia pestis Antiqua
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108780174, gi....

Description	E-value	Query Range	Subject Range
gi\|77958967, gi\|... - gi\|77958967\|ref\|ZP_00822992.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot... gi\|238717414, gi... - gi\|77960045\|ref\|ZP_00823944.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot...	1.0E-34	[1..181]	[1..181]
gi\|77977643, gi\|... - gi\|77977643\|ref\|ZP_00833086.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot...	2.0E-34	[1..181]	[1..181]
gi\|238788124, gi... - gi\|77974628\|ref\|ZP_00830167.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot...	4.0E-34	[1..181]	[1..181]
gi\|116108080, gi... - gi\|116512426\|ref\|YP_809642.1\| spermidine acetyltransferase [Lactococcus lactis subsp. cremoris SK11]...	1.0E-33	[1..179]	[4..182]
gi\|25303645 - pir\|\|G86826 diamine N-acetyltransferase (EC 2.3.1.57) [imported] - Lactococcus lactis subsp. lactis ... gi\|12724622, gi\|... - gi\|15673597\|ref\|NP_267771.1\| spermidine acetyltransferase [Lactococcus lactis subsp. lactis Il1403],...	2.0E-33	[1..175]	[4..178]
gi\|52784100, gi\|... - gi\|52784100\|ref\|YP_089929.1\| YnaD [Bacillus licheniformis ATCC 14580], gi\|52346602\|gb\|AAU39236.1\| Yn...	3.0E-33	[2..169]	[4..176]
YP20_BACLI - Uncharacterized N-acetyltransferase p20 OS=Bacillus licheniformis GN=p20 PE=3 SV=1	3.0E-33	[2..169]	[4..176]
gi\|91072368, gi\|... - gi\|91210794\|ref\|YP_540780.1\| spermidine N(1)-acetyltransferase [Escherichia coli UTI89], gi\|91072368... gi\|218365223, gi... - gi\|218558454\|ref\|YP_002391367.1\| spermidine N1-acetyltransferase [Escherichia coli S88], gi\|21836522... gi\|110641710, gi... - gi\|110641710\|ref\|YP_669440.1\| spermidine N(1)-acetyltransferase [Escherichia coli 536], gi\|110343302... gi\|218689505, gi... - gi\|218689505\|ref\|YP_002397717.1\| spermidine N1-acetyltransferase [Escherichia coli ED1a], gi\|2184270... gi\|218351878, gi... - gi\|218695146\|ref\|YP_002402813.1\| spermidine N1-acetyltransferase [Escherichia coli 55989], gi\|218351... gi\|218369836, gi... - gi\|218699850\|ref\|YP_002407479.1\| spermidine N1-acetyltransferase [Escherichia coli IAI39], gi\|218369... gi\|218432180, gi... - gi\|218705083\|ref\|YP_002412602.1\| spermidine N1-acetyltransferase [Escherichia coli UMN026], gi\|21843... gi\|117623770, gi... - gi\|117623770\|ref\|YP_852683.1\| spermidine N1-acetyltransferase [Escherichia coli APEC O1], gi\|1155128... gi\|237705523, gi... - gi\|237705523\|ref\|ZP_04536004.1\| spermidine N1-acetyltransferase [Escherichia sp. 3_2_53FAA], gi\|2269... gi\|227836988, gi... - gi\|227886059\|ref\|ZP_04003864.1\| spermidine N(1)-acetyltransferase [Escherichia coli 83972], gi\|22783... gi\|170682991, gi... - gi\|170682991\|ref\|YP_001743670.1\| diamine N-acetyltransferase [Escherichia coli SMS-3-5], gi\|17052070... gi\|215486759, gi... - gi\|215486759\|ref\|YP_002329190.1\| spermidine N1-acetyltransferase [Escherichia coli O127:H6 str. E234... gi\|191174333, gi... - gi\|75236701\|ref\|ZP_00720780.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot... gi\|26247829, gi\|... - gi\|26247829\|ref\|NP_753869.1\| spermidine N(1)-acetyltransferase [Escherichia coli CFT073], gi\|2610823...	1.0E-32	[1..176]	[1..176]
gi\|517105, gi\|89... - gi\|89108425\|ref\|AP_002205.1\| spermidine N1-acetyltransferase [Escherichia coli str. K-12 substr. W31... gi\|169889083, gi... - gi\|170081248\|ref\|YP_001730568.1\| spermidine N1-acetyltransferase [Escherichia coli str. K-12 substr.... gi\|75512983, gi\|... - gi\|75512983\|ref\|ZP_00735464.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot... gi\|13361756, gi\|... - gi\|15831544\|ref\|NP_310317.1\| spermidine N1-acetyltransferase [Escherichia coli O157:H7 str. Sakai], ... gi\|170020063, gi... - gi\|170020063\|ref\|YP_001725017.1\| GCN5-related N-acetyltransferase [Escherichia coli ATCC 8739], gi\|1... gi\|193066737, gi... - gi\|75255070\|ref\|ZP_00726972.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot... gi\|208810229, gi... - gi\|208810229\|ref\|ZP_03252105.1\| diamine N-acetyltransferase [Escherichia coli O157:H7 str. EC4206], ... gi\|192959740, gi... - gi\|75239773\|ref\|ZP_00723734.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot... gi\|195938973 - gi\|195938973\|ref\|ZP_03084355.1\| spermidine N1-acetyltransferase [Escherichia coli O157:H7 str. EC402... gi\|208741115, gi... - gi\|208820992\|ref\|ZP_03261312.1\| diamine N-acetyltransferase [Escherichia coli O157:H7 str. EC4042], ... gi\|238900799, gi... - gi\|238900799\|ref\|YP_002926595.1\| spermidine N1-acetyltransferase [Escherichia coli BW2952], gi\|23886... gi\|208817028, gi... - gi\|208817028\|ref\|ZP_03258148.1\| diamine N-acetyltransferase [Escherichia coli O157:H7 str. EC4045], ... gi\|251785042, gi... - gi\|251785042\|ref\|YP_002999346.1\| hypothetical protein B21_01543 [Escherichia coli BL21], gi\|24237731... gi\|209918896, gi... - gi\|209918896\|ref\|YP_002292980.1\| spermidine N1-acetyltransferase [Escherichia coli SE11], gi\|2099121... gi\|254288434, gi... - gi\|254288434\|ref\|YP_003054182.1\| spermidine N1-acetyltransferase [Escherichia coli BL21(DE3)], gi\|25... gi\|209398880, gi... - gi\|209398880\|ref\|YP_002270655.1\| diamine N-acetyltransferase [Escherichia coli O157:H7 str. EC4115],... gi\|254161645, gi... - gi\|254161645\|ref\|YP_003044753.1\| spermidine N1-acetyltransferase [Escherichia coli B str. REL606], g... gi\|194424638, gi... - gi\|83587919\|ref\|ZP_00926545.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot... gi\|168757505, gi... - gi\|189355516\|gb\|EDU73935.1\| diamine N-acetyltransferase [Escherichia coli O157:H7 str. EC4401], gi\|1... gi\|254592601, gi... - gi\|254793201\|ref\|YP_003078038.1\| spermidine N1-acetyltransferase [Escherichia coli O157:H7 str. TW14... gi\|188015230, gi... - gi\|188015230\|gb\|EDU53352.1\| diamine N-acetyltransferase [Escherichia coli O157:H7 str. EC4113], gi\|1... gi\|168771689, gi... - gi\|189359614\|gb\|EDU78033.1\| diamine N-acetyltransferase [Escherichia coli O157:H7 str. EC4486], gi\|1... gi\|189366201, gi... - gi\|189366201\|gb\|EDU84617.1\| diamine N-acetyltransferase [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|191165872, gi... - gi\|75230967\|ref\|ZP_00717416.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot... gi\|188999195, gi... - gi\|188999195\|gb\|EDU68181.1\| diamine N-acetyltransferase [Escherichia coli O157:H7 str. EC4076], gi\|1... gi\|194415845, gi... - gi\|75212921\|ref\|ZP_00712919.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot... gi\|168775808, gi... - gi\|187768725\|gb\|EDU32569.1\| diamine N-acetyltransferase [Escherichia coli O157:H7 str. EC4196], gi\|1... gi\|75195664, gi\|... - gi\|75195664\|ref\|ZP_00705734.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot... gi\|168800838, gi... - gi\|189376926\|gb\|EDU95342.1\| diamine N-acetyltransferase [Escherichia coli O157:H7 str. EC508], gi\|16... gi\|157156145, gi... - gi\|75190624\|ref\|ZP_00703891.1\| COG1670: Acetyltransferases, including N-acetylases of ribosomal prot... gi\|168789415, gi... - gi\|189370923\|gb\|EDU89339.1\| diamine N-acetyltransferase [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|218360919, gi... - gi\|218554151\|ref\|YP_002387064.1\| spermidine N1-acetyltransferase [Escherichia coli IAI1], gi\|2183609... gi\|217328652, gi... - gi\|217328652\|ref\|ZP_03444733.1\| diamine N-acetyltransferase [Escherichia coli O157:H7 str. TW14588],... ATDA_ECOLI - Spermidine N(1)-acetyltransferase (EC 2.3.1.57) (Diamine acetyltransferase) (SAT) - Escherichia coli ATDA_ECO57 - Spermidine N(1)-acetyltransferase OS=Escherichia coli O157:H7 GN=speG PE=3 SV=2 EG12447 - spermidine N(1)-acetyltransferase / Spermidine N(1)-acetyltransferase gi\|15801998, gi\|... - gi\|15801998\|ref\|NP_288019.1\| spermidine N1-acetyltransferase [Escherichia coli O157:H7 EDL933], gi\|1... EG12447 - spermidine N(1)-acetyltransferase / Spermidine N(1)-acetyltransferase gi\|124529261, gi... - gi\|124529261\|ref\|ZP_01700336.1\| GCN5-related N-acetyltransferase [Escherichia coli B], gi\|124500035\|...	2.0E-32	[1..176]	[1..176]
gi\|167040456, gi... - gi\|167040456\|ref\|YP_001663441.1\| GCN5-related N-acetyltransferase [Thermoanaerobacter sp. X514], gi\|... gi\|255339225, gi... - gi\|255339225\|ref\|ZP_05380065.1\| GCN5-related N-acetyltransferase [Thermoanaerobacter mathranii subsp... gi\|242256373, gi... - gi\|242256373\|ref\|ZP_04801265.1\| GCN5-related N-acetyltransferase [Thermoanaerobacter sp. X513], gi\|2...	2.0E-32	[2..170]	[9..182]

Back

Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTSSVRLR PLEREDLPFV HQLDNNASIM RYWFEEPYEA FVELCDLYDK HIHDQSERRF  60
   61 IIESQGTKIG LVELVEINHI HRRAEFQIII DPTHQGKGYA GAAAKLAMEY GFSVLNLYKL 120
  121 YLIVDKENEK AIHIYSKLGF EIEGELKQEF FINGEYRTVI RMCIFQPQYL AKYKTPSIKN 180
  181 A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	1nslA
Description:	Probable acetyltransferase YdaF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.34977492703662	bayes_pls_golite062009
transferase activity	1.92514630957121	bayes_pls_golite062009
N-acyltransferase activity	1.84700347747217	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.75772333794819	bayes_pls_golite062009
diamine N-acetyltransferase activity	1.70366130289739	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.63399963366073	bayes_pls_golite062009
acyltransferase activity	1.60091210227059	bayes_pls_golite062009
acetyltransferase activity	1.12147423121182	bayes_pls_golite062009
N-acetyltransferase activity	0.796917859235554	bayes_pls_golite062009
ornithine decarboxylase regulator activity	0.242898256634811	bayes_pls_golite062009
ornithine decarboxylase inhibitor activity	0.212532359888719	bayes_pls_golite062009
arginine N-succinyltransferase activity	0.141144689590571	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: