YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|108780351, gi...
Organism:	Yersinia pestis Antiqua
Length:	545 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108780351, gi....

Description	E-value	Query Range	Subject Range
gi\|116048677, gi... - gi\|53727320\|ref\|ZP_00138359.2\| COG0029: Aspartate oxidase [Pseudomonas aeruginosa UCBPP-PA14], gi\|11... gi\|126198394, gi... - gi\|84322833\|ref\|ZP_00970914.1\| COG0029: Aspartate oxidase [Pseudomonas aeruginosa 2192], gi\|25424501... NADB_PSEAE - L-aspartate oxidase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) ... NADB_PSEAE - L-aspartate oxidase OS=Pseudomonas aeruginosa GN=nadB PE=3 SV=1	0.0	[16..545]	[2..533]
gi\|194550109, gi... - gi\|84316728\|ref\|ZP_00965194.1\| COG0029: Aspartate oxidase [Pseudomonas aeruginosa C3719], gi\|2542391... gi\|218893296, gi... - gi\|218893296\|ref\|YP_002442165.1\| L-aspartate oxidase [Pseudomonas aeruginosa LESB58], gi\|218773524\|e... gi\|107100222 - gi\|107100222\|ref\|ZP_01364140.1\| hypothetical protein PaerPA_01001245 [Pseudomonas aeruginosa PACS2]	0.0	[16..545]	[2..533]
gi\|48729749, gi\|... - gi\|77457587\|ref\|YP_347092.1\| L-aspartate oxidase [Pseudomonas fluorescens Pf0-1], gi\|77381590\|gb\|ABA...	0.0	[16..545]	[2..533]
gi\|152984192, gi... - gi\|94418135\|ref\|ZP_01297951.1\| hypothetical protein PaerP_01000286 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[16..545]	[2..533]
gi\|238784179, gi... - gi\|77958597\|ref\|ZP_00822628.1\| COG0029: Aspartate oxidase [Yersinia bercovieri ATCC 43970], gi\|23878...	0.0	[13..545]	[1..533]
gi\|165925217, gi... - gi\|165925217\|ref\|ZP_02221049.1\| L-aspartate oxidase [Yersinia pestis biovar Orientalis str. F1991016... gi\|165937100, gi... - gi\|89104165\|ref\|ZP_01176716.1\| COG0029: Aspartate oxidase [Yersinia pestis biovar Orientalis str. IP... gi\|165992446, gi... - gi\|166008064\|ref\|ZP_02228962.1\| L-aspartate oxidase [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|166206503, gi... - gi\|166212572\|ref\|ZP_02238607.1\| L-aspartate oxidase [Yersinia pestis biovar Antiqua str. B42003004],... gi\|167050850, gi... - gi\|167398346\|ref\|ZP_02303870.1\| L-aspartate oxidase [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|167421279, gi... - gi\|167421279\|ref\|ZP_02313032.1\| L-aspartate oxidase [Yersinia pestis biovar Orientalis str. MG05-102... gi\|162419916, gi... - gi\|77634982\|ref\|ZP_00797072.1\| COG0029: Aspartate oxidase [Yersinia pestis Angola], gi\|162419916\|ref... gi\|153947342, gi... - gi\|77629933\|ref\|ZP_00792519.1\| COG0029: Aspartate oxidase [Yersinia pseudotuberculosis IP 31758], gi... NADB_YERPE - L-aspartate oxidase OS=Yersinia pestis GN=nadB PE=3 SV=2 gi\|229681540, gi... - gi\|229901611\|ref\|ZP_04516733.1\| quinolinate synthase, L-aspartate oxidase (B protein) subunit [Yersi... gi\|167423350, gi... - gi\|167423350\|ref\|ZP_02315103.1\| L-aspartate oxidase [Yersinia pestis biovar Mediaevalis str. K197300... gi\|229688385, gi... - gi\|229898837\|ref\|ZP_04513982.1\| quinolinate synthase, L-aspartate oxidase (B protein) subunit [Yersi... gi\|229701337, gi... - gi\|229895531\|ref\|ZP_04510702.1\| quinolinate synthase, L-aspartate oxidase (B protein) subunit [Yersi... gi\|229694639, gi... - gi\|229838273\|ref\|ZP_04458432.1\| quinolinate synthase, L-aspartate oxidase (B protein) subunit [Yersi...	0.0	[13..545]	[1..533]
gi\|148549501, gi... - gi\|82739757\|ref\|ZP_00902546.1\| L-aspartate oxidase [Pseudomonas putida F1], gi\|82713168\|gb\|EAP48293....	0.0	[16..545]	[2..533]
gi\|238793779, gi... - gi\|77978416\|ref\|ZP_00833845.1\| COG0029: Aspartate oxidase [Yersinia intermedia ATCC 29909], gi\|23879...	0.0	[13..545]	[1..533]
gi\|24982892, gi\|... - gi\|26988159\|ref\|NP_743584.1\| L-aspartate oxidase [Pseudomonas putida KT2440], gi\|24982892\|gb\|AAN6704...	0.0	[16..545]	[2..533]
gi\|238723818, gi... - gi\|77974730\|ref\|ZP_00830269.1\| COG0029: Aspartate oxidase [Yersinia frederiksenii ATCC 33641], gi\|23...	0.0	[13..545]	[1..533]

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Predicted Domain #1

Region A:
Residues: [1-545]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPTLLLHTS YDMQSSSEHI SDVLIIGSGA AGLSLALRLA PHCKVTVLSK GPLNEGATFY  60
   61 AQGGIAAVFD ETDSISSHVD DTLIAGAGLC DKEAVEFIAS NARSCVQWLI DQGVLFDTET 120
  121 SANGEERYHL TREGGHSHRR ILHTADATGK EVETTLVGKA SNHPNISVKE RCNAVDLITS 180
  181 NKIGLAGTKR VVGAYVWNRE LEKVETFRAK AVVLATGGAA KVYQYTTNPD ISSGDGIAMA 240
  241 WRAGCRVANL EFNQFHPTCL FHPQARNFLL TEALRGEGAY LKRPDGSRFM LDFDPRGELA 300
  301 PRDIVARAID HEMKRLGADC MYLDISHKPT DFVMQHFPMI YEKLLSLGID LTKEAIPIVP 360
  361 AAHYTCGGVM VDQHGRTDLD GLYAIGEVSY TGLHGANRMA SNSLLECLVY GWSAAEDILT 420
  421 RLPTAKLAKH LPDWDESRVD NSDERVVIQH NWHELRLFMW DYVGIVRTTK RLERALRRIN 480
  481 TLQQEIDEYY ANFRISNNLL ELRNLVQVAE LIVRCAMERK ESRGLHYTLD YPDQIENPQP 540
  541 TILHP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	131.0
Match:	1chuA
Description:	L-aspartate oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	10.1355816274563	bayes_pls_golite062009
L-aspartate oxidase activity	7.97437641217089	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	7.4746833070215	bayes_pls_golite062009
aspartate oxidase activity	7.32727957948448	bayes_pls_golite062009
succinate dehydrogenase (ubiquinone) activity	7.26739070786089	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	7.26739070786089	bayes_pls_golite062009
oxidoreductase activity	6.1068533307878	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	5.74880353813045	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	5.00880700655468	bayes_pls_golite062009
electron carrier activity	2.8553929424231	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	2.26549080531565	bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity	2.16428165652808	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	2.11247286526577	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	1.91979117253135	bayes_pls_golite062009
catalytic activity	1.75556359035561	bayes_pls_golite062009
binding	1.41440014472974	bayes_pls_golite062009
transporter activity	0.890824576391732	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	0.798505263716232	bayes_pls_golite062009
transmembrane transporter activity	0.706117386114413	bayes_pls_golite062009
fumarate reductase (NADH) activity	0.65260793370113	bayes_pls_golite062009
FAD binding	0.503028015880333	bayes_pls_golite062009
substrate-specific transporter activity	0.491481205015383	bayes_pls_golite062009
succinate-CoA ligase activity	0.468246082354334	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.26114823844682	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	0.224438371728402	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.164825358655637	bayes_pls_golite062009
protein binding	0.159209309982354	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: