YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19114668
Organism:	Schizosaccharomyces pombe 972h-
Length:	361 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19114668.

Description	E-value	Query Range	Subject Range
gi\|73986991 - gi\|73986991\|ref\|XP_533920.2\| PREDICTED: similar to Suppressor of SWI4 1 homolog (Ssf-1) (Peter Pan h...	418.0	[0..3]	[354..32]
gi\|119604482, gi... - gi\|99028871\|ref\|NP_001035754.1\| PPAN-P2RY11 protein [Homo sapiens], gi\|119604482\|gb\|EAW84076.1\| hCG2... gi\|189442454 - gi\|189442454\|gb\|AAI67833.1\| PPAN-P2RY11 readthrough transcript [synthetic construct]	407.0	[0..3]	[356..32]
gi\|109123340 - gi\|109123340\|ref\|XP_001100207.1\| PREDICTED: peter pan homolog isoform 1 [Macaca mulatta]	404.0	[0..3]	[356..32]
gi\|114675282 - gi\|114675282\|ref\|XP_001150990.1\| PREDICTED: PPAN-P2RY11 protein [Pan troglodytes]	404.0	[0..3]	[356..32]
SSF1_MOUSE - Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=1	397.0	[0..3]	[354..32]
gi\|58865536, gi\|... - gi\|58865536\|ref\|NP_001011980.1\| peter pan homolog [Rattus norvegicus], gi\|58476466\|gb\|AAH89842.1\| Pe...	396.0	[0..3]	[354..32]
gi\|19309666 - gi\|19309666\|emb\|CAB11063.2\| SPAC1B9.03c [Schizosaccharomyces pombe]	396.0	[0..1]	[361..12]
gi\|86826797, gi\|... - gi\|86826797\|gb\|AAI12866.1\| PPAN-P2RY11 readthrough transcript [Bos taurus], gi\|114053139\|ref\|NP_0010...	389.0	[0..3]	[354..32]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIRSGASEV GRSLSLLTRD LRHMMEPHTA IRLKERKANK IKDYLTMAGP LGVTHLLVLS  60
   61 RTDNNANLRI IRAPRGPSLH FRIHEYMLNK DVRRLQKNPK SPTTEFLTPP LLVM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	2cxhA
Description:	Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.78917266819015	bayes_pls_golite062009
protein binding	0.665778090365515	bayes_pls_golite062009
catalytic activity	0.359891129710676	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [115-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHFNQNSSKD SPHEALLTTT FQNMFPPISV QHTNINSVKR VLLLNRRDDG YIDLRHFIIS  60
   61 TKPVGISRPI RHLLKGEKKD SDIPDLHNVR DISDYVLHGD GISGAASDSE IEEDATVEID 120
  121 RPVPTKTEEN LLSASQLLKP KQQAIKLIEI GPRMTLELIK ITEDAMGGKV LYHSHVH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.055517
Match:	PF04427.9
Description:	No description for PF04427.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [292-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSKEEIKQQD NFHEQSRALK EKRKKEQDEN VRRKRENKKR RKDQKKEGIT SSNKNDDSGN  60
   61 EGSSAYSDTE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: