YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107103171
Organism:	Pseudomonas aeruginosa PACS2
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107103171.

Description	E-value	Query Range	Subject Range
gi\|82737201, gi\|... - gi\|82737201\|ref\|ZP_00900053.1\| Peptidase M24A, methionine aminopeptidase, subfamily 1 [Pseudomonas p...	2.0E-74	[1..260]	[1..260]
gi\|94414735, gi\|... - gi\|94414735\|ref\|ZP_01294590.1\| hypothetical protein PaerP_01003491 [Pseudomonas aeruginosa PA7], gi\|...	3.0E-74	[1..261]	[1..261]
tr\|I7C9E7\|I7C9E7... - Methionine aminopeptidase OS=Pseudomonas putida (strain DOT-T1E) GN=map PE=3 SV=1 tr\|E4RGF7\|E4RGF7... - Methionine aminopeptidase OS=Pseudomonas putida (strain BIRD-1) GN=map PE=3 SV=1 gi\|24983070, gi\|... - gi\|26988322\|ref\|NP_743747.1\| methionine aminopeptidase [Pseudomonas putida KT2440], gi\|24983070\|gb\|A...	3.0E-74	[1..260]	[1..260]
gi\|104783196, gi... - gi\|95112183\|emb\|CAK16910.1\| methionine aminopeptidase [Pseudomonas entomophila L48], gi\|104783196\|re... gi\|95112183 - gi\|95112183\|emb\|CAK16910.1\| methionine aminopeptidase [Pseudomonas entomophila L48]	3.0E-74	[1..260]	[1..260]
gi\|68342856, gi\|... - gi\|70728557\|ref\|YP_258306.1\| methionine aminopeptidase [Pseudomonas fluorescens Pf-5], gi\|68342856\|g...	8.0E-74	[1..260]	[37..296]
gi\|226945942, gi... - gi\|67156413\|ref\|ZP_00418006.1\| Peptidase M24A, methionine aminopeptidase, subfamily 1 [Azotobacter v... gi\|53612494, gi\|... - gi\|67156413\|ref\|ZP_00418006.1\| Peptidase M24A, methionine aminopeptidase, subfamily 1 [Azotobacter v...	1.0E-73	[1..258]	[1..258]
gi\|77457327, gi\|... - gi\|77457327\|ref\|YP_346832.1\| methionine aminopeptidase [Pseudomonas fluorescens Pf0-1], gi\|77381330\|...	2.0E-73	[1..260]	[1..260]
gi\|66044590, gi\|... - gi\|66044590\|ref\|YP_234431.1\| methionine aminopeptidase [Pseudomonas syringae pv. syringae B728a], gi...	4.0E-73	[1..255]	[1..255]
gi\|196156190, gi... - gi\|88796890\|ref\|ZP_01112521.1\| methionine aminopeptidase; contains a divalent metal, usually cobalt ...	8.0E-73	[1..259]	[1..261]
gi\|77360961, gi\|... - gi\|77360961\|ref\|YP_340536.1\| methionine aminopeptidase; contains a divalent metal, usually cobalt [P...	2.0E-72	[1..260]	[1..260]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVTIKTPDD IEKMRIAGRL AAEVLEMIGE HIKPGVTTEE LDRICHDYIV NEQKAIPAPL  60
   61 NYKGFPKSIC TSINHVVCHG IPNEKPLKEG DILNVDITVI KDGYHGDTSK MFLVGKTPEW 120
  121 ADRLCQITQE CMYKGISVVR PGAHLGDIGE IIQKHAEKNG FSVVREYCGH GIGKVFHEEP 180
  181 QVLHYGRAGT GIELKEGMIF TIEPMINQGR PETRLLGDGW TAITKDRKLS AQWEHTVLVT 240
  241 ADGYEILTLR NDETFPRTSA A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.045757
Match:	4matA
Description:	Methionine aminopeptidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	0.71486512278733	bayes_pls_golite062009
catalytic activity	0.51899181055614	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.41611107366763	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: