YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107099234
Organism:	Pseudomonas aeruginosa PACS2
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107099234.

Description	E-value	Query Range	Subject Range
gi\|68559799, gi\|... - gi\|94311994\|ref\|YP_585204.1\| 3-dehydroquinate dehydratase [Ralstonia metallidurans CH34], gi\|9335584...	1.0E-63	[3..148]	[14..160]
gi\|116053958, gi... - gi\|32043413\|ref\|ZP_00140675.1\| COG0757: 3-dehydroquinate dehydratase II [Pseudomonas aeruginosa UCBP...	2.0E-63	[1..148]	[1..148]
gi\|83719706, gi\|... - gi\|83719706\|ref\|YP_441711.1\| 3-dehydroquinate dehydratase [Burkholderia thailandensis E264], gi\|8365...	3.0E-63	[1..148]	[58..205]
gi\|49076012 - gi\|49076012\|gb\|AAT49517.1\| PA0245 [synthetic construct]	1.0E-62	[1..148]	[1..148]
gi\|94413740, gi\|... - gi\|94413740\|ref\|ZP_01293617.1\| hypothetical protein PaerP_01004525 [Pseudomonas aeruginosa PA7], gi\|...	2.0E-62	[1..148]	[1..148]
gi\|46143753 - gi\|46143753\|ref\|ZP_00204566.1\| COG0757: 3-dehydroquinate dehydratase II [Actinobacillus pleuropneumo... AROQ_ACTP2 - 3-dehydroquinate dehydratase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=aroQ PE=... AROQ_ACTPJ - 3-dehydroquinate dehydratase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=aroQ PE=... AROQ_ACTP7 - 3-dehydroquinate dehydratase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=aroQ PE=... AROQ_ACTPL - 3-dehydroquinate dehydratase OS=Actinobacillus pleuropneumoniae GN=aroQ PE=1 SV=1	4.0E-62	[3..145]	[2..144]
gi\|76809110, gi\|... - gi\|76809110\|ref\|YP_334870.1\| 3-dehydroquinate dehydratase [Burkholderia pseudomallei 1710b], gi\|7657...	5.0E-62	[1..148]	[58..205]
gi\|68348474, gi\|... - gi\|70734175\|ref\|YP_257815.1\| 3-dehydroquinate dehydratase [Pseudomonas fluorescens Pf-5], gi\|6834847...	2.0E-61	[4..148]	[51..196]
gi\|1084142 - gi\|1084142\|pir\|\|S41538 3-dehydroquinate dehydratase (EC 4.2.1.10) - Actinobacillus pleuropneumoniae	4.0E-61	[3..145]	[2..144]
gi\|48781085, gi\|... - gi\|91785246\|ref\|YP_560452.1\| 3-dehydroquinate dehydratase [Burkholderia xenovorans LB400], gi\|916892...	5.0E-61	[1..148]	[1..148]

Back

Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRTVLVLNG PNLNLLGTRE PQTYGRRTLG EIADECAAFA ETRGFAVDFR QTNQEGQLLD  60
   61 WIHQARGRVA GIVINPAAWT HTSVALRDAL AAVELPVVEV HLSNVHQREA FRHHSYVSPV 120
  121 ALGVICGFGS LGYRLALEHF AERFEAAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.522879
Match:	1uqrA
Description:	Type II 3-dehydroquinate dehydratase (DHQase) from Actinobacillus pleuropneumoniae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-dehydroquinate dehydratase activity	4.89182009956779	bayes_pls_golite062009
catalytic activity	2.05174935916901	bayes_pls_golite062009
lyase activity	1.8611664916998	bayes_pls_golite062009
carbon-oxygen lyase activity	1.85854553303143	bayes_pls_golite062009
hydro-lyase activity	1.7760166106171	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: