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View Structure Prediction Details

Protein: gi|107100357
Organism: Pseudomonas aeruginosa PACS2
Length: 448 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107100357.

Description E-value Query
Range		 Subject
Range
ASTB_PSEAB - N-succinylarginine dihydrolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=astB PE=3 SV=1
 0.0 [1..448] [1..448]
ASTB_PSEA7 - N-succinylarginine dihydrolase OS=Pseudomonas aeruginosa (strain PA7) GN=astB PE=3 SV=1
 0.0 [1..448] [1..448]
ASTB_PSE14 - N-succinylarginine dihydrolase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN...
 0.0 [1..448] [1..448]
ASTB_PSEU2 - N-succinylarginine dihydrolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=astB PE=3 SV=1
 0.0 [1..448] [1..448]
ASTB_PSESM - N-succinylarginine dihydrolase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=astB PE=3 SV=1
ASTB_PSESM - N-succinylarginine dihydrolase OS=Pseudomonas syringae pv. tomato GN=astB PE=3 SV=1
 0.0 [1..448] [1..448]
ASTB_PSEF5 - N-succinylarginine dihydrolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=astB PE=3 ...
 0.0 [1..448] [1..448]
ASTB_PSEE4 - N-succinylarginine dihydrolase OS=Pseudomonas entomophila (strain L48) GN=astB PE=3 SV=1
gi|95111862 - gi|95111862|emb|CAK16586.1| succinylarginine dihydrolase [Pseudomonas entomophila L48]
 0.0 [1..447] [1..447]
ASTB_PSEPK - N-succinylarginine dihydrolase OS=Pseudomonas putida (strain KT2440) GN=astB PE=3 SV=1
 0.0 [1..447] [1..447]
ASTB_PSEP1 - N-succinylarginine dihydrolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=astB PE=3 SV=1
 0.0 [1..447] [1..447]
ASTB_SHELP - N-succinylarginine dihydrolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=astB PE=3 SV=1
 0.0 [1..446] [1..444]

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Predicted Domain #1
Region A:
Residues: [1-448] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAHEVNFDG LVGPTHNYGG LSYGNVASQS NSQAVSNPKE AAKQGLAKMK ALMEMGFKQG  60
   61 VLAPQARPDT AALRSLGFSG SDEEVIRRAA KEAMPLLAAC SSASSMWTAN AATVSPSADT 120
  121 ADGRVHFTAA NLNCKFHRSI EHPTTSRVLA AMFNDERHFA HHAALPAVSQ FGDEGAANHT 180
  181 RFCKDYGDAG VEFFVFGRSA FDSRFPAPQR YPARQTLEAC QAVARLHGLS EAGVVYAQQN 240
  241 PAVIDQGVFH NDVISVGNGE VLFHHEDAFL DTEKVLAELH DKLGRRGGRF RAICVPRDQV 300
  301 AVEDAVKSYL FNSQLLSKAD GSMLLVVPEE CRNNPRVWNY LDQLTGDDGP IREVKVFDLK 360
  361 QSMQNGGGPA CLRLRVALQE RELAAVNPGV IMSAGLYDTL VAWVDRHYRD RLSETDLADP 420
  421 QLLLECRTAL DELTQILKLG SVYSFQLD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1ynfA
Description: Crystal Structure of N-Succinylarginine Dihydrolase, AstB, bound to Substrate and Product, an Enzyme from the Arginine Catabolic Pathway of Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines 1.80356530015579 bayes_pls_golite062009
N-succinylarginine dihydrolase activity 1.79190392361658 bayes_pls_golite062009
catalytic activity 1.2603605268935 bayes_pls_golite062009
protein-arginine deiminase activity 1.23765841785254 bayes_pls_golite062009
arginine deiminase activity 1.06118411192651 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 0.89634749643842 bayes_pls_golite062009
hydrolase activity 0.79014898516962 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle