YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110807729, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110807729, gi....

Description	E-value	Query Range	Subject Range
gi\|189380010, gi... - gi\|189380010\|gb\|EDU98426.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC508], gi\|1687... gi\|169753096, gi... - gi\|170018168\|ref\|YP_001723122.1\| mannitol repressor protein [Escherichia coli ATCC 8739], gi\|1697530... gi\|195935127 - gi\|195935127\|ref\|ZP_03080509.1\| mannitol repressor protein [Escherichia coli O157:H7 str. EC4024] gi\|208808988, gi... - gi\|208808988\|ref\|ZP_03251325.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4206], gi... gi\|208734676, gi... - gi\|208813399\|ref\|ZP_03254728.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4045], gi... gi\|208740816, gi... - gi\|208820693\|ref\|ZP_03261013.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4042], gi... gi\|209400358, gi... - gi\|209400358\|ref\|YP_002273080.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4115], g... gi\|209914330, gi... - gi\|209921071\|ref\|YP_002295155.1\| mannitol repressor protein [Escherichia coli SE11], gi\|209914330\|db... gi\|188018342, gi... - gi\|188018342\|gb\|EDU56464.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|189359136, gi... - gi\|189359136\|gb\|EDU77555.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|168759692, gi... - gi\|189369530\|gb\|EDU87946.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|189364738, gi... - gi\|189364738\|gb\|EDU83157.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|187771605, gi... - gi\|187771605\|gb\|EDU35449.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|189002515, gi... - gi\|189002515\|gb\|EDU71501.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|168785472, gi... - gi\|189374674\|gb\|EDU93090.1\| mannitol operon repressor [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|157080978, gi... - gi\|75188364\|ref\|ZP_00701631.1\| COG3722: Transcriptional regulator [Escherichia coli E24377A], gi\|157... gi\|75211356, gi\|... - gi\|75211356\|ref\|ZP_00711455.1\| COG3722: Transcriptional regulator [Escherichia coli B171], gi\|194427... gi\|194431208, gi... - gi\|83571591\|ref\|ZP_00923031.1\| COG3722: Transcriptional regulator [Shigella dysenteriae 1012], gi\|19... gi\|192926272, gi... - gi\|75255817\|ref\|ZP_00727563.1\| COG3722: Transcriptional regulator [Escherichia coli E22], gi\|1930661... gi\|73857642, gi\|... - gi\|74314165\|ref\|YP_312584.1\| mannitol repressor protein [Shigella sonnei Ss046], gi\|73857642\|gb\|AAZ9... gi\|254594955, gi... - gi\|254795555\|ref\|YP_003080392.1\| DNA-binding repressor [Escherichia coli O157:H7 str. TW14359], gi\|2... gi\|190901815, gi... - gi\|75228664\|ref\|ZP_00715285.1\| COG3722: Transcriptional regulator [Escherichia coli B7A], gi\|1911681... gi\|193068493, gi... - gi\|75237541\|ref\|ZP_00721574.1\| COG3722: Transcriptional regulator [Escherichia coli E110019], gi\|193... gi\|217321259, gi... - gi\|217325038\|ref\|ZP_03441122.1\| mannitol operon repressor [Escherichia coli O157:H7 str. TW14588], g... gi\|218362931, gi... - gi\|218556163\|ref\|YP_002389076.1\| mannitol repressor protein [Escherichia coli IAI1], gi\|218362931\|em... gi\|218354054, gi... - gi\|218697322\|ref\|YP_002404989.1\| mannitol repressor protein [Escherichia coli 55989], gi\|218354054\|e... gi\|15833731, gi\|... - gi\|15833731\|ref\|NP_312504.1\| repressor for mtl [Escherichia coli O157:H7], gi\|13363952\|dbj\|BAB37900.... gi\|25391649, gi\|... - pir\|\|E86035 repressor for mtl [imported] - Escherichia coli (strain O157:H7, substrain EDL933), pir... gi\|12518345, gi\|... - gi\|15804142\|ref\|NP_290181.1\| mannitol repressor protein [Escherichia coli O157:H7 EDL933], gi\|125183... gi\|15833731, gi\|... - gi\|15833731\|ref\|NP_312504.1\| mannitol repressor protein [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|124499169, gi... - gi\|124530528\|ref\|ZP_01701155.1\| mannitol repressor, MtlR [Escherichia coli B], gi\|124499169\|gb\|EAY46...	286.0	[0..1]	[195..1]
gi\|24054101, gi\|... - gi\|24114865\|ref\|NP_709375.1\| mannitol repressor protein [Shigella flexneri 2a str. 301], gi\|24054101... gi\|30043386, gi\|... - gi\|30065125\|ref\|NP_839296.1\| mannitol repressor protein [Shigella flexneri 2a str. 2457T], gi\|300433...	283.0	[0..1]	[195..1]
gi\|16504927, gi\|... - gi\|25513043\|pir\|\|AG0976 mannitol operon repressor (mannitol repressor protein) [imported] - Salmonel... gi\|16766972, gi\|... - gi\|16766972\|ref\|NP_462587.1\| mannitol repressor protein [Salmonella typhimurium LT2], gi\|16422253\|gb... lcl\|NC_016856.1_... - [gene=mtlR] [protein=mannitol repressor protein] [protein_id=YP_005239925.1] [location=3892240..3892... gi\|29144111, gi\|... - gi\|29144111\|ref\|NP_807453.1\| mannitol repressor protein [Salmonella enterica subsp. enterica serovar... gi\|16762622 - gi\|16762622\|ref\|NP_458239.1\| mannitol repressor protein [Salmonella enterica subsp. enterica serovar... gi\|194401434, gi... - gi\|194442771\|ref\|YP_002042935.1\| mannitol operon repressor [Salmonella enterica subsp. enterica sero... gi\|194406759, gi... - gi\|194448455\|ref\|YP_002047716.1\| mannitol repressor protein [Salmonella enterica subsp. enterica ser... gi\|194472286, gi... - gi\|194472286\|ref\|ZP_03078270.1\| mannitol operon repressor [Salmonella enterica subsp. enterica serov... gi\|194710619, gi... - gi\|194735117\|ref\|YP_002116623.1\| mannitol operon repressor [Salmonella enterica subsp. enterica sero... gi\|168241863, gi... - gi\|205338929\|gb\|EDZ25693.1\| mannitol operon repressor [Salmonella enterica subsp. enterica serovar H... gi\|205350135, gi... - gi\|205350135\|gb\|EDZ36766.1\| mannitol operon repressor [Salmonella enterica subsp. enterica serovar H... gi\|195632485, gi... - gi\|195632485\|gb\|EDX50969.1\| mannitol operon repressor [Salmonella enterica subsp. enterica serovar N... gi\|168818483, gi... - gi\|205344550\|gb\|EDZ31314.1\| mannitol operon repressor [Salmonella enterica subsp. enterica serovar W... gi\|205325498, gi... - gi\|205325498\|gb\|EDZ13337.1\| mannitol operon repressor [Salmonella enterica subsp. enterica serovar S... gi\|205327776, gi... - gi\|205327776\|gb\|EDZ14540.1\| mannitol operon repressor [Salmonella enterica subsp. enterica serovar 4... gi\|205333206, gi... - gi\|205333206\|gb\|EDZ19970.1\| mannitol operon repressor [Salmonella enterica subsp. enterica serovar K... gi\|197291555, gi... - gi\|197291555\|gb\|EDY30907.1\| mannitol operon repressor [Salmonella enterica subsp. enterica serovar S... gi\|161616761, gi... - gi\|161616761\|ref\|YP_001590726.1\| mannitol repressor protein [Salmonella enterica subsp. enterica ser... gi\|213865450 - gi\|213865450\|ref\|ZP_03387569.1\| mannitol repressor protein [Salmonella enterica subsp. enterica sero... gi\|214001131 - gi\|214001131\|ref\|ZP_03411866.1\| mannitol repressor protein [Salmonella enterica subsp. enterica sero... gi\|224470015, gi... - gi\|224585487\|ref\|YP_002639286.1\| mannitol operon repressor [Salmonella enterica subsp. enterica sero... gi\|213420779 - gi\|213420779\|ref\|ZP_03353845.1\| mannitol repressor protein [Salmonella enterica subsp. enterica sero... gi\|213427167 - gi\|213427167\|ref\|ZP_03359917.1\| mannitol repressor protein [Salmonella enterica subsp. enterica sero... gi\|213617512 - gi\|213617512\|ref\|ZP_03372338.1\| mannitol repressor protein [Salmonella enterica subsp. enterica sero... gi\|213650630 - gi\|213650630\|ref\|ZP_03380683.1\| mannitol repressor protein [Salmonella enterica subsp. enterica sero... gi\|204322072, gi... - gi\|204928639\|ref\|ZP_03219838.1\| mannitol operon repressor [Salmonella enterica subsp. enterica serov... gi\|205274490, gi... - gi\|205354709\|ref\|YP_002228510.1\| mannitol repressor protein [Salmonella enterica subsp. enterica ser... gi\|207858924, gi... - gi\|207858924\|ref\|YP_002245575.1\| mannitol repressor protein [Salmonella enterica subsp. enterica ser... gi\|213161872 - gi\|213161872\|ref\|ZP_03347582.1\| mannitol repressor protein [Salmonella enterica subsp. enterica sero... gi\|197215580, gi... - gi\|197251877\|ref\|YP_002148618.1\| mannitol operon repressor [Salmonella enterica subsp. enterica sero... gi\|197262667, gi... - gi\|197262667\|ref\|ZP_03162741.1\| mannitol operon repressor [Salmonella enterica subsp. enterica serov... gi\|198243447, gi... - gi\|198243447\|ref\|YP_002217648.1\| mannitol operon repressor [Salmonella enterica subsp. enterica sero... gi\|200387490, gi... - gi\|200387490\|ref\|ZP_03214102.1\| mannitol operon repressor [Salmonella enterica subsp. enterica serov... gi\|238910278 - gi\|238910278\|ref\|ZP_04654115.1\| mannitol repressor protein [Salmonella enterica subsp. enterica sero...	277.0	[0..3]	[195..4]
gi\|62129814, gi\|... - gi\|62182181\|ref\|YP_218598.1\| mannitol repressor protein [Salmonella enterica subsp. enterica serovar...	277.0	[0..3]	[195..4]
gi\|5566392 - gi\|5566392\|gb\|AAD45387.1\|AF166095_3 mtl operon repressor [Klebsiella pneumoniae] gi\|206569580, gi... - gi\|206580522\|ref\|YP_002236035.1\| mannitol operon repressor [Klebsiella pneumoniae 342], gi\|206569580...	275.0	[0..1]	[195..1]
gi\|85057994, gi\|... - gi\|85057994\|ref\|YP_453696.1\| mannitol operon repressor [Sodalis glossinidius str. 'morsitans'], gi\|8...	236.0	[0..3]	[193..11]
gi\|50119050, gi\|... - gi\|50119050\|ref\|YP_048217.1\| mannitol repressor protein [Pectobacterium atrosepticum SCRI1043], gi\|4...	235.0	[0..15]	[193..19]
gi\|229352770, gi... - gi\|229510325\|ref\|ZP_04399805.1\| mannitol operon repressor [Vibrio cholerae B33], gi\|229352770\|gb\|EEO... gi\|153817667, gi... - gi\|153817667\|ref\|ZP_01970334.1\| mannitol operon repressor [Vibrio cholerae NCTC 8457], gi\|126511823\|... gi\|227812611, gi... - gi\|227812611\|ref\|YP_002812621.1\| mannitol operon repressor [Vibrio cholerae M66-2], gi\|227011753\|gb\|... gi\|229371839, gi... - gi\|229605353\|ref\|YP_002876057.1\| mannitol operon repressor [Vibrio cholerae MJ-1236], gi\|229371839\|g... gi\|229356171, gi... - gi\|229505820\|ref\|ZP_04395329.1\| mannitol operon repressor [Vibrio cholerae BX 330286], gi\|229356171\|... gi\|229345579, gi... - gi\|229517543\|ref\|ZP_04406988.1\| mannitol operon repressor [Vibrio cholerae RC9], gi\|229345579\|gb\|EEO... gi\|197753867, gi... - gi\|254284665\|ref\|ZP_04959632.1\| mannitol operon repressor [Vibrio cholerae AM-19226], gi\|197753867\|r... gi\|227120241, gi... - gi\|227120241\|ref\|YP_002822136.1\| mannitol operon repressor [Vibrio cholerae O395], gi\|227015691\|gb\|A... gi\|11355645 - pir\|\|D82385 mannitol operon repressor VCA1047 [imported] - Vibrio cholerae (strain N16961 serogroup ... gi\|121630953, gi... - gi\|121726647\|ref\|ZP_01679883.1\| mannitol operon repressor [Vibrio cholerae V52], gi\|121630953\|gb\|EAX... gi\|121587177, gi... - gi\|121587177\|ref\|ZP_01676952.1\| mannitol operon repressor [Vibrio cholerae 2740-80], gi\|121548616\|gb... gi\|254850205, gi... - gi\|254850205\|ref\|ZP_05239555.1\| mannitol repressor protein [Vibrio cholerae MO10], gi\|254845910\|gb\|E... gi\|15601798, gi\|... - gi\|9658491\|gb\|AAF96941.1\| mannitol operon repressor [Vibrio cholerae O1 biovar eltor str. N16961], g... gi\|153220534, gi... - gi\|153220534\|ref\|ZP_01951668.1\| mannitol operon repressor [Vibrio cholerae MAK 757], gi\|124120365\|gb...	233.0	[0..16]	[193..8]
gi\|238727556, gi... - gi\|77978092\|ref\|ZP_00833526.1\| COG3722: Transcriptional regulator [Yersinia intermedia ATCC 29909], ...	231.0	[0..21]	[191..1]
gi\|238798349, gi... - gi\|77960732\|ref\|ZP_00824591.1\| COG3722: Transcriptional regulator [Yersinia mollaretii ATCC 43969], ...	231.0	[0..21]	[191..1]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDQAQDTLR PNNRLSDMQA TMEQTQAFEN RVLERLNAGK TVRSFLITAV ELLTEAVNLL  60
   61 VLQVFRKDDY AVKYAVEPLL DGDGPLGDLS VRLKLIYGLG VINRQEYEDA ELLMALREEL 120
  121 NHDGNEYAFT DDEILGPFGE LHCVAALPPP PQFEPADSSL YAMQIQRYQQ AVRSTMVLSL 180
  181 TELISKISLK KAFQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	2hktA
Description:	No description for 2hktA was found.

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	1.76728328288819	bayes_pls_golite062009
nucleic acid binding	1.3981494081148	bayes_pls_golite062009
DNA binding	1.34753445366139	bayes_pls_golite062009
transcription factor activity	1.15951423643663	bayes_pls_golite062009
binding	0.923764328759134	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: