YRC Public Data Repository - Protein Structure Prediction

Protein:	CXL11_MOUSE
Organism:	Mus musculus
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CXL11_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|30016905 - gi\|30016905\|gb\|AAP03703.1\| interferon g inducible protein 10/scFv single chain antibody fusion prote...	107.0	[0..1]	[96..1]
gi\|1082968 - pir\|\|A53096 interleukin-8 precursor - pig IL8_PIG - Interleukin-8 OS=Sus scrofa GN=CXCL8 PE=1 SV=1	102.0	[0..1]	[98..1]
gi\|45384324, gi\|... - gi\|9280593\|gb\|AAF86485.1\| CXC chemokine K60 [Gallus gallus], gi\|45384324\|ref\|NP_990349.1\| interleuki...	101.0	[0..1]	[96..2]
gi\|55741690 - ref\|NP_001003200.1\| interleukin 8 [Canis familiaris] IL8_CANLF - Interleukin-8 OS=Canis lupus familiaris GN=CXCL8 PE=3 SV=1	100.0	[0..1]	[96..1]
gi\|111036708, gi... - gi\|111036708\|dbj\|BAF02384.1\| interleukin-8 [Anas platyrhynchos], gi\|111036706\|dbj\|BAF02383.1\| interl...	99.0	[0..1]	[94..1]
IL8_RABIT - Interleukin-8 OS=Oryctolagus cuniculus GN=CXCL8 PE=1 SV=2	99.0	[0..1]	[96..1]
gi\|17907787 - gi\|17907787\|dbj\|BAB79448.1\| interleukin-8 [Triakis scyllium]	98.0	[0..1]	[95..1]
gi\|83016753, gi\|... - gi\|83016753\|dbj\|BAE53442.1\| Interleukin-8 [Anser cygnoides], gi\|156138762\|dbj\|BAF75873.1\| interleuki... gi\|88702700 - gi\|88702700\|gb\|ABD49205.1\| IL-8 [Anser anser]	98.0	[0..1]	[94..1]
gi\|149033842, gi... - gi\|33636734\|ref\|NP_891997.1\| chemokine (C-X-C motif) ligand 11 [Rattus norvegicus], gi\|33331080\|gb\|A...	97.0	[0..1]	[100..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRKVTAIAL AAIIWATAAQ GFLMFKQGRC LCIGPGMKAV KMAEIEKASV IYPSNGCDKV  60
   61 EVIVTMKAHK RQRCLDPRSK QARLIMQAIE KKNFLRRQNM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	1rjtA
Description:	NMR Structure of CXC Chemokine CXCL11/ITAC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytokine activity	3.38627292865864	bayes_pls_golite062009
receptor binding	3.04507059999735	bayes_pls_golite062009
binding	2.18970164263717	bayes_pls_golite062009
chemokine activity	2.05925718158167	bayes_pls_golite062009
chemokine receptor binding	2.05925718158167	bayes_pls_golite062009
G-protein-coupled receptor binding	1.96078163633533	bayes_pls_golite062009
protein binding	1.94048824861059	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: