YRC Public Data Repository - Protein Structure Prediction

Protein:	SPR2G_MOUSE
Organism:	Mus musculus
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPR2G_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|28379477, gi\|... - gi\|28379477\|ref\|NP_786369.1\| cell surface protein precursor [Lactobacillus plantarum WCFS1], gi\|2827...	121.0	[0..4]	[75..1177]
gi\|116095803, gi... - gi\|116630221\|ref\|YP_815393.1\| hypothetical protein LGAS_1663 [Lactobacillus gasseri ATCC 33323], gi\|...	102.0	[0..4]	[76..2211]
gi\|25388168 - pir\|\|F95013 pneumococcal surface protein A [imported] - Streptococcus pneumoniae (strain TIGR4) gi\|14971584, gi\|... - gi\|15900059\|ref\|NP_344663.1\| pneumococcal surface protein A [Streptococcus pneumoniae TIGR4], gi\|149...	94.0	[0..10]	[76..465]
gi\|46981433 - gi\|46981433\|gb\|AAT07704.1\| tegument protein [Human herpesvirus 3]	91.0	[0..20]	[75..2544]
gi\|42519684, gi\|... - gi\|42519684\|ref\|NP_965614.1\| hypothetical protein LJ0641 [Lactobacillus johnsonii NCC 533], gi\|41583...	82.0	[0..3]	[75..1230]
TTN - titin	81.0	[0..6]	[72..10210]
NFM_CHICK - Neurofilament medium polypeptide OS=Gallus gallus GN=NEFM PE=2 SV=2	78.0	[0..5]	[76..635]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQEQQCKQ PCQPPPVCPP PKCPEPCPLP KCPEPCPPPK CPEPCPEPCL PSPCQQKCPP  60
   61 VQTPPPCQQK CPPKSK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.4
Match:	1qy6A
Description:	Structue of V8 Protease from Staphylococcus aureus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits