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View Structure Prediction Details

Protein: gi|2071991, gi|1...
Organism: Mus musculus
Length: 169 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2071991, gi|1....

Description E-value Query
Range
Subject
Range
gi|123287401, gi... - gi|123287401|emb|CAM27115.1| stimulated by retinoic acid 13 [Mus musculus], gi|112180543|gb|AAH52335...
214.0 [0..56] [169..1]
gi|109119194 - gi|109119194|ref|XP_001113300.1| PREDICTED: similar to stimulated by retinoic acid 13 [Macaca mulatt...
116.0 [0..101] [169..155]
gi|55728033 - gi|55728033|emb|CAH90769.1| hypothetical protein [Pongo abelii]
CENPX_PONAB - Centromere protein X OS=Pongo abelii GN=STRA13 PE=3 SV=1
113.0 [0..101] [169..13]
gi|114671076 - gi|114671076|ref|XP_001167110.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
113.0 [0..101] [169..13]
gi|149055067, gi... - gi|149055067|gb|EDM06884.1| rCG34515, isoform CRA_c [Rattus norvegicus], gi|109492402|ref|XP_0010818...
112.0 [0..101] [169..10]
CENPX_BOVIN - Centromere protein X OS=Bos taurus GN=STRA13 PE=3 SV=1
104.0 [0..101] [169..11]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGNSGFRKA IHFEGRGCLS LPTFCLSLVV PHSVLDYANL SGLGFTHCTD ARGLLMAHLW  60
   61 CSHGIPRPLD SPSHLHLTNY HQPFSSQA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [89-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPDAWPICRH HLELVSRLLH LHFRDCKTKV SGDALQLMAE FLRIFVLEAA VRGVWQAQAE  60
   61 DLDVVEVDQL EKVLPQLLLD F

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.97
Match: 2bykB
Description: Histone fold heterodimer of the Chromatin Accessibility Complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.455107270213523 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle