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View Structure Prediction Details

Protein: gi|2071991, gi|1...
Organism: Mus musculus
Length: 169 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2071991, gi|1....

Description E-value Query
Range
Subject
Range
gi|123287401, gi... - gi|123287401|emb|CAM27115.1| stimulated by retinoic acid 13 [Mus musculus], gi|112180543|gb|AAH52335...
214.0 [0..56] [169..1]
gi|109119194 - gi|109119194|ref|XP_001113300.1| PREDICTED: similar to stimulated by retinoic acid 13 [Macaca mulatt...
116.0 [0..101] [169..155]
gi|55728033 - gi|55728033|emb|CAH90769.1| hypothetical protein [Pongo abelii]
CENPX_PONAB - Centromere protein X OS=Pongo abelii GN=STRA13 PE=3 SV=1
113.0 [0..101] [169..13]
gi|114671076 - gi|114671076|ref|XP_001167110.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
113.0 [0..101] [169..13]
gi|149055067, gi... - gi|149055067|gb|EDM06884.1| rCG34515, isoform CRA_c [Rattus norvegicus], gi|109492402|ref|XP_0010818...
112.0 [0..101] [169..10]
CENPX_BOVIN - Centromere protein X OS=Bos taurus GN=STRA13 PE=3 SV=1
104.0 [0..101] [169..11]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGNSGFRKA IHFEGRGCLS LPTFCLSLVV PHSVLDYANL SGLGFTHCTD ARGLLMAHLW  60
   61 CSHGIPRPLD SPSHLHLTNY HQPFSSQA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [89-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPDAWPICRH HLELVSRLLH LHFRDCKTKV SGDALQLMAE FLRIFVLEAA VRGVWQAQAE  60
   61 DLDVVEVDQL EKVLPQLLLD F

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.97
Match: 2bykB
Description: Histone fold heterodimer of the Chromatin Accessibility Complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.455107270213523 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle